[ci/r] Use TileDB-R 0.21.1 binaries

single-cell-data · Sep 29, 2023 · 16d5475 · 16d5475
1 parent d5dee48
commit 16d5475
Showing 1 changed file with 14 additions and 9 deletions.
diff --git a/.github/workflows/r-ci.yml b/.github/workflows/r-ci.yml
@@ -41,15 +41,20 @@ jobs:
       - name: Install BioConductor package SingleCellExperiment
         run: cd apis/r && tools/r-ci.sh install_bioc SingleCellExperiment
 
-      # Given propagation delay for binaries at https://r2u.stat.illinois.edu/ubuntu/pool/dists/jammy/main/
-      - name: Install r-universe build of tiledb-r (macOS)
-        if: ${{ matrix.os == 'macOS-latest' }}
-        run: cd apis/r && Rscript -e "install.packages('tiledb', repos = c('https://eddelbuettel.r-universe.dev', 'https://cloud.r-project.org'))"
-
-      # Given propagation delay for binaries at https://r2u.stat.illinois.edu/ubuntu/pool/dists/jammy/main/
-      - name: Install r-universe build of tiledb-r (linux)
-        if: ${{ matrix.os != 'macOS-latest' }}
-        run: cd apis/r && Rscript -e "options(bspm.version.check=TRUE); install.packages('tiledb', repos = c('https://eddelbuettel.r-universe.dev/bin/linux/jammy/4.3/', 'https://cloud.r-project.org'))"  
+      # The next two stanzas are necessary given propagation delay for binaries at
+      #   https://r2u.stat.illinois.edu/ubuntu/pool/dists/jammy/main/
+      # which occurs when source for tiledb-r version-next is available but binaries are not yet.
+      # To check if binaries are available:
+      #   docker run --rm -ti rocker/r2u Rscript -e 'install.packages("tiledb")'
+
+      #- name: Install r-universe build of tiledb-r (macOS)
+      #  if: ${{ matrix.os == 'macOS-latest' }}
+      #  run: cd apis/r && Rscript -e "install.packages('tiledb', repos = c('https://eddelbuettel.r-universe.dev', 'https://cloud.r-project.org'))"
+
+      #   docker run --rm -ti rocker/r2u Rscript -e 'install.packages("tiledb")'
+      #- name: Install r-universe build of tiledb-r (linux)
+      #  if: ${{ matrix.os != 'macOS-latest' }}
+      #  run: cd apis/r && Rscript -e "options(bspm.version.check=TRUE); install.packages('tiledb', repos = c('https://eddelbuettel.r-universe.dev/bin/linux/jammy/4.3/', 'https://cloud.r-project.org'))"  
 
       - name: Dependencies
         run: cd apis/r && tools/r-ci.sh install_all