The repository contains MATLAB scripts for simulating systems using strand displacing polymerase. Several systems are simulated such as: (a) Autocatalytic amplifier, (b) Consensus network, (c) Rock-paper-scissor oscillator. The paper will be presented at DNA 25 conference in Seattle, US (2019).
For more details, refer to our the full-paper:
Shah S., Song T., Song X., Yang M., Reif J. (2019) Implementing Arbitrary CRNs Using Strand Displacing Polymerase. In: Thachuk C., Liu Y. (eds) DNA Computing and Molecular Programming. DNA 2019. Lecture Notes in Computer Science, vol 11648. Springer, Cham [pdf]