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Update plotting #387

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8 warnings

unknown option ‘--no-build-vignettes --ignore-vignettes --no-manual’

unknown option ‘--no-manual --no-build-vignettes --ignore-vignettes’

'::' or ':::' imports not declared from:

Missing link or links in Rd file 'plot_clusters_used_for_phasing.Rd':

Undocumented code objects:

Undocumented arguments in Rd file 'callHaplotypeSpecificCN.Rd'

The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

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