R-CMD-check

Updatesvplots (#55) #386

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1 error and 10 warnings

No such keg: /opt/homebrew/Cellar/r

unknown option ‘--no-build-vignettes --ignore-vignettes --no-manual’

unknown option ‘--no-manual --no-build-vignettes --ignore-vignettes’

'::' or ':::' imports not declared from:

Missing link or links in Rd file 'plot_clusters_used_for_phasing.Rd':

Undocumented code objects:

Undocumented arguments in Rd file 'callHaplotypeSpecificCN.Rd'

The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

macOS's Gatekeeper has been disabled for this Cask

pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config

HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!