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Mediccsitkasegs#2

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amcpherson wants to merge 11 commits intomainshahcompbio/medicc2_nextflow:mainfrom mediccsitkasegsshahcompbio/medicc2_nextflow:mediccsitkasegsCopy head branch name to clipboard

+684-44

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Commits on Nov 24, 2022

• medicc ancestral reconstruction from sitka trees

  amcpherson

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  4795b13

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• added tests

  amcpherson

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  455707a

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• minor: fix test

  amcpherson

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  ba80bee

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• bugfix: tree comparison in tests

  amcpherson

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  c9da28f

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• bugix: incorrect path to subworkflow

  amcpherson

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  1535502

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• bugfix: use filtered signals as input to create medicc input

  amcpherson

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  395c079

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• config: added medicc sitka tasks

  amcpherson

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  3315ce0

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• minor: tweaked recursion limit

  amcpherson

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  d2b1b96

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Commits on Nov 29, 2022

• feature: take sitka segments as input

  amcpherson

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  5afff11

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Commits on Dec 7, 2022

• full medicc pipeline for running with sitka segments

  amcpherson

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  3604510

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Commits on Dec 8, 2022

• grch37 and config fixes

  amcpherson

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  690ade8

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