Update GWAS tutorial vcf2zarr schema to include 'variant_length' fiel…

…d for indexing
sgkit-dev · Jan 14, 2025 · 34ba02c · 34ba02c
1 parent 8f3703f
commit 34ba02c
Showing 1 changed file with 23 additions and 0 deletions.
diff --git a/docs/examples/1kg.schema.json b/docs/examples/1kg.schema.json
@@ -1368,6 +1368,29 @@
             },
             "filters": []
         },
+        {
+            "name": "variant_length",
+            "dtype": "i1",
+            "shape": [
+                10879
+            ],
+            "chunks": [
+                10000
+            ],
+            "dimensions": [
+                "variants"
+            ],
+            "description": "The length of the variant measured in bases",
+            "vcf_field": "rlen",
+            "compressor": {
+                "id": "blosc",
+                "cname": "zstd",
+                "clevel": 7,
+                "shuffle": 0,
+                "blocksize": 0
+            },
+            "filters": []
+        },
         {
             "name": "call_AD",
             "dtype": "i1",