Comment out failing scatterplot

sgkit-dev · Sep 5, 2023 · 2b08b31 · 2b08b31
1 parent e90796b
commit 2b08b31
Showing 1 changed file with 5 additions and 3 deletions.
diff --git a/docs/examples/gwas_tutorial.ipynb b/docs/examples/gwas_tutorial.ipynb
@@ -5878,7 +5878,8 @@
     "sample_dp_mean = dp.mean(dim=\"variants\")\n",
     "sample_dp_mean.attrs[\"long_name\"] = \"Mean Sample DP\"\n",
     "ds[\"sample_dp_mean\"] = sample_dp_mean # add new data array to dataset\n",
-    "ds.plot.scatter(x=\"sample_dp_mean\", y=\"sample_call_rate\", size=8, s=10);"
+    "# Following does not work with recent versions of xarray, see https://github.com/pystatgen/sgkit/issues/934\n",
+    "#ds.plot.scatter(x=\"sample_dp_mean\", y=\"sample_call_rate\", size=8, s=10);"
    ]
   },
   {
@@ -13116,7 +13117,8 @@
     "ds_pca[\"sample_pca_projection_0\"] = ds_pca.sample_pca_projection[:,0]\n",
     "ds_pca[\"sample_pca_projection_1\"] = ds_pca.sample_pca_projection[:,1]\n",
     "ds_pca[\"sample_pca_projection_2\"] = ds_pca.sample_pca_projection[:,2]\n",
-    "ds_pca.plot.scatter(x=\"sample_pca_projection_0\", y=\"sample_pca_projection_1\", hue=\"SuperPopulation\", size=8, s=10);"
+    "# Following does not work with recent versions of xarray, see https://github.com/pystatgen/sgkit/issues/934\n",
+    "#ds_pca.plot.scatter(x=\"sample_pca_projection_0\", y=\"sample_pca_projection_1\", hue=\"SuperPopulation\", size=8, s=10);"
    ]
   },
   {
@@ -13223,7 +13225,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.16"
+   "version": "3.10.12"
   }
  },
  "nbformat": 4,