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Validation

Validation #1442

Workflow file for this run

name: Validation
on:
schedule:
# Run at the end of every day
- cron: "0 0 * * *"
# manual trigger
workflow_dispatch:
jobs:
validation_suite:
# This workflow only runs on the origin org
if: github.repository_owner == 'sgkit-dev'
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: google-github-actions/setup-gcloud@v0
with:
project_id: ${{ secrets.GCP_PROJECT_ID }}
service_account_key: ${{ secrets.GCP_SA_KEY }}
export_default_credentials: true
- name: Download public test data (real HapMap data)
run: gsutil -u $GCLOUD_PROJECT cp gs://sgkit-data/validation/hapmap_JPT_CHB_r23a_filtered.zip /tmp/
- name: Validate PC Relate
run: ./validation/gwas/method/pc_relate/run.sh /tmp/hapmap_JPT_CHB_r23a_filtered.zip