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[metadata] | ||
name = bio2zarr | ||
author = sgkit Developers | ||
author_email = [email protected] | ||
license = Apache | ||
description = FIXME | ||
long_description_content_type=text/x-rst | ||
long_description = | ||
FIXME | ||
url = https://github.com/pystatgen/bio2zarr | ||
classifiers = | ||
Development Status :: 3 - Alpha | ||
License :: OSI Approved :: Apache Software License | ||
Operating System :: OS Independent | ||
Intended Audience :: Science/Research | ||
Programming Language :: Python | ||
Programming Language :: Python :: 3 | ||
Programming Language :: Python :: 3.8 | ||
Programming Language :: Python :: 3.9 | ||
Programming Language :: Python :: 3.10 | ||
Programming Language :: Python :: 3.11 | ||
Topic :: Scientific/Engineering | ||
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[options] | ||
packages = bio2zarr | ||
zip_safe = False # https://mypy.readthedocs.io/en/latest/installed_packages.html | ||
include_package_data = True | ||
python_requires = >=3.8 | ||
install_requires = | ||
numpy | ||
zarr >= 2.10.0, != 2.11.0, != 2.11.1, != 2.11.2 | ||
cyvcf2 | ||
bed_reader | ||
setup_requires = | ||
setuptools >= 41.2 | ||
setuptools_scm | ||
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||
[flake8] | ||
ignore = | ||
# whitespace before ':' - doesn't work well with black | ||
E203 | ||
E402 | ||
# line too long - let black worry about that | ||
E501 | ||
# do not assign a lambda expression, use a def | ||
E731 | ||
# line break before binary operator | ||
W503 | ||
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||
[isort] | ||
profile = black | ||
default_section = THIRDPARTY | ||
known_first_party = sgkit | ||
known_third_party = hypothesis,msprime,numpy,pandas,pytest,setuptools,sgkit,zarr | ||
multi_line_output = 3 | ||
include_trailing_comma = True | ||
force_grid_wrap = 0 | ||
use_parentheses = True | ||
line_length = 88 |
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#!/usr/bin/env python | ||
from setuptools import setup | ||
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setup( | ||
# The package name along with all the other metadata is specified in setup.cfg | ||
# However, GitHub's dependency graph can't see the package unless we put this here. | ||
name="bio2zarr", | ||
use_scm_version=True, | ||
) |