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1. OpenGene/fastp OpenGene/fastp Public

   An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

   C++ 1.9k 333

2. OpenGene/MutScan OpenGene/MutScan Public

   Detect and visualize target mutations by scanning FastQ files directly

   C 149 38

3. OpenGene/GeneFuse OpenGene/GeneFuse Public

   Gene fusion detection and visualization

   C 115 63

4. OpenGene/gencore OpenGene/gencore Public

   Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

   C++ 115 31

5. OpenGene/repaq OpenGene/repaq Public

   A fast lossless FASTQ compressor with ultra-high compression ratio

   C 124 19

6. OpenGene/fastplong OpenGene/fastplong Public

   Ultra-fast preprocessing and quality control for long-read sequencing data

   C++ 51 3