fix(annotation): fully deleting old relationships to allow displayUnf… #533
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| name: Build | |
| on: [push, pull_request] | |
| jobs: | |
| client: | |
| strategy: | |
| matrix: | |
| node-version: | |
| - '16.x' | |
| os: | |
| - 'ubuntu-latest' | |
| - 'windows-latest' | |
| - 'macos-latest' | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Use Node.js ${{ matrix.node-version }} | |
| uses: actions/setup-node@v1 | |
| with: | |
| node-version: ${{ matrix.node-version }} | |
| - uses: actions/cache@v2 | |
| with: | |
| path: "**/node_modules" | |
| key: ${{ runner.os }}-${{ matrix.node-version }}-node_modules-${{ hashFiles('**/package-lock.json') }} | |
| - run: npm install | |
| - name: Typecheck with TypeScript | |
| run: npm run typecheck | |
| - name: Build client bundles | |
| run: npm run build -- --no-typecheck | |
| - name: Build JavaScript module | |
| run: npm run build-module -- --no-typecheck | |
| - name: Build Python client bundles | |
| run: npm run build-python -- --no-typecheck | |
| - uses: ./.github/actions/setup-firefox | |
| - name: Run JavaScript tests (including WebGL) | |
| # Swiftshader, used by Chrome headless, crashes when running Neuroglancer | |
| # tests. | |
| # | |
| # The only reliable headless configuration is Firefox on Linux under | |
| # xvfb-run, which uses Mesa software rendering. | |
| if: startsWith(runner.os, 'Linux') | |
| run: xvfb-run --auto-servernum --server-args='-screen 0 1024x768x24' npm run test -- --browsers Firefox | |
| - name: Run JavaScript tests (excluding WebGL) | |
| if: ${{ !startsWith(runner.os, 'Linux') }} | |
| run: npm run test -- --browsers ChromeHeadless --define=NEUROGLANCER_SKIP_WEBGL_TESTS | |
| - name: Run JavaScript benchmarks | |
| run: npm run benchmark | |
| # Builds Python package and runs Python tests | |
| # | |
| # On ubuntu-latest, this also runs browser-based tests. On Mac OS and | |
| # Windows, this only runs tests that do not require a browser, since a working | |
| # headless WebGL2 implementation is not available on Github actions. | |
| python-tox: | |
| strategy: | |
| matrix: | |
| python-version: | |
| - '3.8' | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| node-version: | |
| - '16.x' | |
| os: | |
| - 'ubuntu-latest' | |
| - 'windows-latest' | |
| - 'macos-latest' | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| # Need full history to determine version number. | |
| fetch-depth: 0 | |
| - name: Use Node.js ${{ matrix.node-version }} | |
| uses: actions/setup-node@v1 | |
| with: | |
| node-version: ${{ matrix.node-version }} | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v2 | |
| with: | |
| path: "**/node_modules" | |
| key: ${{ runner.os }}-${{ matrix.node-version }}-node_modules-${{ hashFiles('**/package-lock.json') }} | |
| - name: Get pip cache dir | |
| id: pip-cache | |
| run: | | |
| echo "::set-output name=dir::$(pip cache dir)" | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ runner.os }}-${{ matrix.python-version }}-pip-${{ hashFiles('setup.py') }} | |
| # Uncomment the action below for an interactive shell | |
| # - name: Setup tmate session | |
| # uses: mxschmitt/action-tmate@v3 | |
| - name: Install Python packaging/test tools | |
| run: python -m pip install --upgrade pip tox wheel numpy pytest | |
| - uses: ./.github/actions/setup-firefox | |
| - name: Test with tox | |
| run: tox -e ${{ fromJSON('["skip-browser-tests","firefox-xvfb"]')[runner.os == 'Linux'] }} | |
| env: | |
| TOX_TESTENV_PASSENV: GH_TOKEN | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # Verify that editable install works | |
| - name: Install in editable form | |
| run: pip install -e . --config-settings editable_mode=strict | |
| - name: Run Python tests against editable install (excluding WebGL) | |
| working-directory: python/tests | |
| run: pytest -vv --skip-browser-tests | |
| python-build-package: | |
| strategy: | |
| matrix: | |
| include: | |
| - os: 'ubuntu-latest' | |
| cibw_build: '*' | |
| wheel_identifier: 'linux' | |
| node-version: '16.x' | |
| - os: 'windows-latest' | |
| cibw_build: '*' | |
| wheel_identifier: 'windows' | |
| node-version: '16.x' | |
| - os: 'macos-latest' | |
| cibw_build: '*_x86_64' | |
| wheel_identifier: 'macos_x86_64' | |
| node-version: '16.x' | |
| - os: 'macos-latest' | |
| cibw_build: '*_arm64' | |
| wheel_identifier: 'macos_arm64' | |
| node-version: '16.x' | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| # Need full history to determine version number. | |
| fetch-depth: 0 | |
| - name: Use Node.js | |
| uses: actions/setup-node@v1 | |
| with: | |
| node-version: ${{ matrix.node-version }} | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.x | |
| - uses: actions/cache@v2 | |
| with: | |
| path: "**/node_modules" | |
| key: ${{ runner.os }}-${{ matrix.node-version }}-node_modules-${{ hashFiles('**/package-lock.json') }} | |
| - name: Get pip cache dir | |
| id: pip-cache | |
| run: | | |
| echo "::set-output name=dir::$(pip cache dir)" | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ runner.os }}-buildwheel-${{ hashFiles('setup.py') }} | |
| - run: npm install | |
| - run: | | |
| build_info="{'tag':'$(git describe --always --tags)', 'url':'https://github.com/google/neuroglancer/commit/$(git rev-parse HEAD)', 'timestamp':'$(date)'}" | |
| npm run build-python -- --no-typecheck --define NEUROGLANCER_BUILD_INFO="${build_info}" | |
| shell: bash | |
| - name: Check for dirty working directory | |
| run: git diff --exit-code | |
| - name: Build Python source distribution (sdist) | |
| run: python setup.py sdist --format gztar | |
| if: ${{ runner.os == 'Linux' }} | |
| - name: Install cibuildwheel | |
| run: pip install cibuildwheel | |
| - name: Build Python wheels | |
| run: bash -xve ./python/build_tools/cibuildwheel.sh | |
| env: | |
| # On Linux, share pip cache with manylinux docker containers | |
| CIBW_ENVIRONMENT_LINUX: PIP_CACHE_DIR=/host${{ steps.pip-cache.outputs.dir }} | |
| CIBW_BEFORE_ALL_LINUX: /project/python/build_tools/cibuildwheel_linux_cache_setup.sh /host${{ steps.pip-cache.outputs.dir }} | |
| CIBW_BUILD: ${{ matrix.cibw_build }} | |
| - name: Upload wheels as artifacts | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: python-wheels-${{ matrix.wheel_identifier }} | |
| path: | | |
| dist/*.whl | |
| dist/*.tar.gz | |
| python-publish-package: | |
| # Only publish package on push to tag or default branch. | |
| if: ${{ github.event_name == 'push' && (startsWith(github.ref, 'refs/tags/v') || github.ref == 'refs/heads/master') }} | |
| runs-on: ubuntu-latest | |
| needs: | |
| - 'python-build-package' | |
| steps: | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: python-wheels-linux | |
| path: dist | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: python-wheels-macos_x86_64 | |
| path: dist | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: python-wheels-macos_arm64 | |
| path: dist | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: python-wheels-windows | |
| path: dist | |
| # - name: Publish to PyPI (test server) | |
| # uses: pypa/gh-action-pypi-publish@54b39fb9371c0b3a6f9f14bb8a67394defc7a806 # 2020-09-25 | |
| # with: | |
| # user: __token__ | |
| # password: ${{ secrets.pypi_test_token }} | |
| - name: Publish to PyPI (main server) | |
| uses: pypa/gh-action-pypi-publish@54b39fb9371c0b3a6f9f14bb8a67394defc7a806 # 2020-09-25 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.pypi_token }} | |
| if: ${{ startsWith(github.ref, 'refs/tags/v') }} | |
| ngauth: | |
| strategy: | |
| matrix: | |
| go-version: ['1.19'] | |
| os: | |
| - ubuntu-latest | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup go ${{ matrix.go-version }} | |
| uses: actions/setup-go@v1 | |
| with: | |
| go-version: ${{ matrix.go-version }} | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ~/go/pkg/mod | |
| key: ${{ runner.os }}-${{ matrix.go-version }}-go-${{ hashFiles('**/go.sum') }} | |
| - run: go build . | |
| working-directory: ngauth_server | |
| wasm: | |
| # Ensures that .wasm files are reproducible. | |
| strategy: | |
| matrix: | |
| os: | |
| - ubuntu-latest | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - run: ./src/neuroglancer/mesh/draco/build.sh | |
| - run: ./src/neuroglancer/sliceview/compresso/build.sh | |
| - run: ./src/neuroglancer/sliceview/png/build.sh | |
| # Check that there are no differences. | |
| - run: git diff --exit-code |