Debug

include/stellar/query_id_map.hpp

@@ -27,7 +27,13 @@ struct QueryIDMap
     size_t recordID(TQuery const & query) const
     {
         TQuery const * begin = &queries[0];
+        std::cout << *begin << '\n';
+        //!ERROR: query is not a reference to the queries set but a copy (that has a different memory address)
+        std::cout << "Find recordID of query:" << '\n';
+        std::cout << query << '\n';
         TQuery const * current = std::addressof(query);
+        std::cout << *current << '\n';
+        std::cout << "recordID:" << current - begin << '\n';
         return current - begin;
     }
 };

include/stellar/stellar.hpp

@@ -282,7 +282,7 @@ _stellarKernel(StellarSwiftFinder<TAlphabet> & finder,  // iterate over database
             return find(finder, pattern, swiftVerifier.eps_match_options.epsilon, swiftVerifier.eps_match_options.minLength);
         });
 
-        if (!has_next)
+         if (!has_next)
             break;
 
         StellarDatabaseSegment<TAlphabet> databaseSegment

include/stellar/stellar_launcher.hpp

@@ -73,6 +73,7 @@ struct StellarLauncher
             // but in LocalQueryPrefilter case it can just be build over [query0].
             // We need to translate that position to a numerical index in the list of queries
             size_t const queryRecordID = queryIDMap.recordID(pattern);
+            std::cout << "queryRecordID:" << queryRecordID << '\n';
             return value(localMatches, queryRecordID);
         };
 

include/stellar/stellar_query_segment.tpp

@@ -18,9 +18,14 @@ StellarQuerySegment<TAlphabet>
 StellarQuerySegment<TAlphabet>::fromPatternMatch(TSwiftPattern const & swiftPattern)
 {
     size_t const queryID = swiftPattern.curSeqNo;
+    std::cout << "queryID" << queryID << '\n';
+    std::cout << std::addresof(swift)
     auto const & queryInfix = seqan2::getSequenceByNo(queryID, seqan2::indexText(seqan2::needle(swiftPattern)));
     static_assert(std::is_same_v<decltype(queryInfix), TInfixSegment const &>);
     auto const & underlyingQuery = host(queryInfix);
+    std::cout << "queryInfix in fromPatternMatch" << queryInfix << '\n';
+    std::cout << "from PatternMatch host address:" << std::addressof(queryInfix) << '\n';
+    std::cout << "from PatternMatch host address:" << std::addressof(underlyingQuery) << '\n';
     static_assert(std::is_same_v<decltype(underlyingQuery), seqan2::String<TAlphabet> const &>);
     auto const queryInfixInfix = seqan2::infix(swiftPattern, queryInfix);