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[API] The alignment configuration for the band changed to seqan3::align_cfg::band_fixed_size #1873

Merged
merged 5 commits into from
Jun 11, 2020
Merged

[API] The alignment configuration for the band changed to seqan3::align_cfg::band_fixed_size #1873

merged 5 commits into from
Jun 11, 2020

Commits on Jun 11, 2020

  1. [TEST] Add exists method to configuration test template.

    @rrahn
    rrahn committed Jun 11, 2020
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  2. [FEATURE] Add strong_type_specialisation concept.

    @rrahn
    rrahn committed Jun 11, 2020
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  3. [FEATURE] Make strong type debug streamable.

    @rrahn
    rrahn committed Jun 11, 2020
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  4. [API] The alignment configuration for the band changed to seqan3::ali… 

    …gn_cfg::band_fixed_size

* Rename the existing band to align_cfg::band_fixed_size
* Introducing strong types for setting lower and upper diagonal
* Direct access of the members via the config.
* Adjust the tutorial and all snippets
* Adjust the API documentation
* Remove all references to the old static_band mechanism
* Fix all dependent classes and tests
    @rrahn
    rrahn committed Jun 11, 2020
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  5. [DOC] Add changelog entry for the changed band configuration.

    @rrahn
    rrahn committed Jun 11, 2020
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