Merge pull request #1145 from sennetconsortium/libpitt/1119-organs

Add new organs to organs.js config - #1119
sennetconsortium · Jan 8, 2024 · aea4d20 · aea4d20
2 parents 6f90fa7 + 6a9462a
commit aea4d20
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diff --git a/src/cache/.ontology_C000008 b/src/cache/.ontology_C000008
@@ -1 +1 @@
-[{"code":"C030024","organ_cui":"C0001527","organ_uberon":"UBERON:0001013","rui_code":"AD","sab":"SENNET","term":"Adipose Tissue"},{"code":"C030025","organ_cui":"C0005767","organ_uberon":"UBERON:0000178","rui_code":"BD","sab":"SENNET","term":"Blood"},{"code":"C030101","organ_cui":"C0005953","organ_uberon":"UBERON:0002371","rui_code":"BM","sab":"SENNET","term":"Bone Marrow"},{"code":"C030026","organ_cui":"C1269537","organ_uberon":"UBERON:0000955","rui_code":"BR","sab":"SENNET","term":"Brain"},{"code":"C030027","organ_cui":"C0006141","organ_uberon":"UBERON:0000310","rui_code":"BS","sab":"SENNET","term":"Breast"},{"code":"C030029","organ_cui":"C0227614","organ_uberon":"UBERON:0004538","rui_code":"LK","sab":"SENNET","term":"Kidney (Left)"},{"code":"C030030","organ_cui":"C0227613","organ_uberon":"UBERON:0004539","rui_code":"RK","sab":"SENNET","term":"Kidney (Right)"},{"code":"C030031","organ_cui":"C0021851","organ_uberon":"UBERON:0000059","rui_code":"LI","sab":"SENNET","term":"Large Intestine"},{"code":"C030032","organ_cui":"C0023884","organ_uberon":"UBERON:0002107","rui_code":"LV","sab":"SENNET","term":"Liver"},{"code":"C030034","organ_cui":"C0225730","organ_uberon":"UBERON:0002168","rui_code":"LL","sab":"SENNET","term":"Lung (Left)"},{"code":"C030035","organ_cui":"C0225706","organ_uberon":"UBERON:0002167","rui_code":"RL","sab":"SENNET","term":"Lung (Right)"},{"code":"C030052","organ_cui":"C0024204","organ_uberon":"UBERON:0000029","rui_code":"LN","sab":"SENNET","term":"Lymph Node"},{"code":"C030036","organ_cui":"C4083049","organ_uberon":"UBERON:0005090","rui_code":"MU","sab":"SENNET","term":"Muscle"},{"code":"C030039","organ_cui":"SENNET:C030039 CUI","organ_uberon":null,"rui_code":"OT","sab":"SENNET","term":"Other"},{"code":"C030038","organ_cui":"C0227874","organ_uberon":"UBERON:0002119","rui_code":"LO","sab":"SENNET","term":"Ovary (Left)"},{"code":"C030041","organ_cui":"C0227873","organ_uberon":"UBERON:0002118","rui_code":"RO","sab":"SENNET","term":"Ovary (Right)"},{"code":"C030054","organ_cui":"C0030274","organ_uberon":"UBERON:0001264","rui_code":"PA","sab":"SENNET","term":"Pancreas"},{"code":"C030055","organ_cui":"C0032043","organ_uberon":"UBERON:0001987","rui_code":"PL","sab":"SENNET","term":"Placenta"},{"code":"C030040","organ_cui":"C1123023","organ_uberon":"UBERON:0002097","rui_code":"SK","sab":"SENNET","term":"Skin"}]
+[{"code":"C030024","organ_cui":"C0001527","organ_uberon":"UBERON:0001013","rui_code":"AD","sab":"SENNET","term":"Adipose Tissue"},{"code":"C030025","organ_cui":"C0005767","organ_uberon":"UBERON:0000178","rui_code":"BD","sab":"SENNET","term":"Blood"},{"code":"C030102","organ_cui":"C0262950","organ_uberon":"UBERON:0001474","rui_code":"BX","sab":"SENNET","term":"Bone"},{"code":"C030101","organ_cui":"C0005953","organ_uberon":"UBERON:0002371","rui_code":"BM","sab":"SENNET","term":"Bone Marrow"},{"code":"C030026","organ_cui":"C1269537","organ_uberon":"UBERON:0000955","rui_code":"BR","sab":"SENNET","term":"Brain"},{"code":"C030027","organ_cui":"C0006141","organ_uberon":"UBERON:0000310","rui_code":"BS","sab":"SENNET","term":"Breast"},{"code":"C030070","organ_cui":"C0018787","organ_uberon":"UBERON:0000948","rui_code":"HT","sab":"SENNET","term":"Heart"},{"code":"C030029","organ_cui":"C0227614","organ_uberon":"UBERON:0004538","rui_code":"LK","sab":"SENNET","term":"Kidney (Left)"},{"code":"C030030","organ_cui":"C0227613","organ_uberon":"UBERON:0004539","rui_code":"RK","sab":"SENNET","term":"Kidney (Right)"},{"code":"C030031","organ_cui":"C0021851","organ_uberon":"UBERON:0000059","rui_code":"LI","sab":"SENNET","term":"Large Intestine"},{"code":"C030032","organ_cui":"C0023884","organ_uberon":"UBERON:0002107","rui_code":"LV","sab":"SENNET","term":"Liver"},{"code":"C030034","organ_cui":"C0225730","organ_uberon":"UBERON:0002168","rui_code":"LL","sab":"SENNET","term":"Lung (Left)"},{"code":"C030035","organ_cui":"C0225706","organ_uberon":"UBERON:0002167","rui_code":"RL","sab":"SENNET","term":"Lung (Right)"},{"code":"C030052","organ_cui":"C0024204","organ_uberon":"UBERON:0000029","rui_code":"LN","sab":"SENNET","term":"Lymph Node"},{"code":"C030036","organ_cui":"C4083049","organ_uberon":"UBERON:0005090","rui_code":"MU","sab":"SENNET","term":"Muscle"},{"code":"C030039","organ_cui":"SENNET:C030039 CUI","organ_uberon":null,"rui_code":"OT","sab":"SENNET","term":"Other"},{"code":"C030038","organ_cui":"C0227874","organ_uberon":"UBERON:0002119","rui_code":"LO","sab":"SENNET","term":"Ovary (Left)"},{"code":"C030041","organ_cui":"C0227873","organ_uberon":"UBERON:0002118","rui_code":"RO","sab":"SENNET","term":"Ovary (Right)"},{"code":"C030054","organ_cui":"C0030274","organ_uberon":"UBERON:0001264","rui_code":"PA","sab":"SENNET","term":"Pancreas"},{"code":"C030055","organ_cui":"C0032043","organ_uberon":"UBERON:0001987","rui_code":"PL","sab":"SENNET","term":"Placenta"},{"code":"C030040","organ_cui":"C1123023","organ_uberon":"UBERON:0002097","rui_code":"SK","sab":"SENNET","term":"Skin"},{"code":"C030072","organ_cui":"C0040113","organ_uberon":"UBERON:0002370","rui_code":"TH","sab":"SENNET","term":"Thymus"}]
diff --git a/src/config/organs.js b/src/config/organs.js
@@ -78,7 +78,7 @@ export const organDetails = {
         urlParamName: "lymph-nodes",
     },
     MU: {
-        icon: "https://cdn.jsdelivr.net/gh/cns-iu/md-icons@main/other-icons/organs/ico-organs-skin.svg",
+        icon: "https://cdn.jsdelivr.net/gh/cns-iu/md-icons@main/other-icons/organs/ico-organs-trachea.svg",
         ruiCode: "MU",
         searchUrl: organSearchUrl("MU"),
         urlParamName: "muscle",
@@ -113,4 +113,28 @@ export const organDetails = {
         searchUrl: organSearchUrl("SK"),
         urlParamName: "skin",
     },
+    BX: {
+        icon: "https://cdn.jsdelivr.net/gh/cns-iu/md-icons@main/other-icons/organs/ico-organs-bone-marrow.svg",
+        ruiCode: "BX",
+        searchUrl: organSearchUrl("BX"),
+        urlParamName: "bone",
+    },
+    TH: {
+        icon: "https://cdn.jsdelivr.net/gh/cns-iu/md-icons@main/other-icons/organs/ico-organs-thymus.svg",
+        ruiCode: "TH",
+        searchUrl: organSearchUrl("TH"),
+        urlParamName: "thymus",
+    },
+    HT: {
+        icon: "https://cdn.jsdelivr.net/gh/cns-iu/md-icons@main/other-icons/organs/ico-organs-heart.svg",
+        ruiCode: "HT",
+        searchUrl: organSearchUrl("HT"),
+        urlParamName: "heart",
+    },
+    OT: {
+        icon: "https://cdn.jsdelivr.net/gh/cns-iu/md-icons@main/other-icons/organs/ico-organs-united.svg",
+        ruiCode: "OT",
+        searchUrl: organSearchUrl("OT"),
+        urlParamName: "other",
+    },
 };
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		[{"code":"C030024","organ_cui":"C0001527","organ_uberon":"UBERON:0001013","rui_code":"AD","sab":"SENNET","term":"Adipose Tissue"},{"code":"C030025","organ_cui":"C0005767","organ_uberon":"UBERON:0000178","rui_code":"BD","sab":"SENNET","term":"Blood"},{"code":"C030101","organ_cui":"C0005953","organ_uberon":"UBERON:0002371","rui_code":"BM","sab":"SENNET","term":"Bone Marrow"},{"code":"C030026","organ_cui":"C1269537","organ_uberon":"UBERON:0000955","rui_code":"BR","sab":"SENNET","term":"Brain"},{"code":"C030027","organ_cui":"C0006141","organ_uberon":"UBERON:0000310","rui_code":"BS","sab":"SENNET","term":"Breast"},{"code":"C030029","organ_cui":"C0227614","organ_uberon":"UBERON:0004538","rui_code":"LK","sab":"SENNET","term":"Kidney (Left)"},{"code":"C030030","organ_cui":"C0227613","organ_uberon":"UBERON:0004539","rui_code":"RK","sab":"SENNET","term":"Kidney (Right)"},{"code":"C030031","organ_cui":"C0021851","organ_uberon":"UBERON:0000059","rui_code":"LI","sab":"SENNET","term":"Large Intestine"},{"code":"C030032","organ_cui":"C0023884","organ_uberon":"UBERON:0002107","rui_code":"LV","sab":"SENNET","term":"Liver"},{"code":"C030034","organ_cui":"C0225730","organ_uberon":"UBERON:0002168","rui_code":"LL","sab":"SENNET","term":"Lung (Left)"},{"code":"C030035","organ_cui":"C0225706","organ_uberon":"UBERON:0002167","rui_code":"RL","sab":"SENNET","term":"Lung (Right)"},{"code":"C030052","organ_cui":"C0024204","organ_uberon":"UBERON:0000029","rui_code":"LN","sab":"SENNET","term":"Lymph Node"},{"code":"C030036","organ_cui":"C4083049","organ_uberon":"UBERON:0005090","rui_code":"MU","sab":"SENNET","term":"Muscle"},{"code":"C030039","organ_cui":"SENNET:C030039 CUI","organ_uberon":null,"rui_code":"OT","sab":"SENNET","term":"Other"},{"code":"C030038","organ_cui":"C0227874","organ_uberon":"UBERON:0002119","rui_code":"LO","sab":"SENNET","term":"Ovary (Left)"},{"code":"C030041","organ_cui":"C0227873","organ_uberon":"UBERON:0002118","rui_code":"RO","sab":"SENNET","term":"Ovary (Right)"},{"code":"C030054","organ_cui":"C0030274","organ_uberon":"UBERON:0001264","rui_code":"PA","sab":"SENNET","term":"Pancreas"},{"code":"C030055","organ_cui":"C0032043","organ_uberon":"UBERON:0001987","rui_code":"PL","sab":"SENNET","term":"Placenta"},{"code":"C030040","organ_cui":"C1123023","organ_uberon":"UBERON:0002097","rui_code":"SK","sab":"SENNET","term":"Skin"}]
		[{"code":"C030024","organ_cui":"C0001527","organ_uberon":"UBERON:0001013","rui_code":"AD","sab":"SENNET","term":"Adipose Tissue"},{"code":"C030025","organ_cui":"C0005767","organ_uberon":"UBERON:0000178","rui_code":"BD","sab":"SENNET","term":"Blood"},{"code":"C030102","organ_cui":"C0262950","organ_uberon":"UBERON:0001474","rui_code":"BX","sab":"SENNET","term":"Bone"},{"code":"C030101","organ_cui":"C0005953","organ_uberon":"UBERON:0002371","rui_code":"BM","sab":"SENNET","term":"Bone Marrow"},{"code":"C030026","organ_cui":"C1269537","organ_uberon":"UBERON:0000955","rui_code":"BR","sab":"SENNET","term":"Brain"},{"code":"C030027","organ_cui":"C0006141","organ_uberon":"UBERON:0000310","rui_code":"BS","sab":"SENNET","term":"Breast"},{"code":"C030070","organ_cui":"C0018787","organ_uberon":"UBERON:0000948","rui_code":"HT","sab":"SENNET","term":"Heart"},{"code":"C030029","organ_cui":"C0227614","organ_uberon":"UBERON:0004538","rui_code":"LK","sab":"SENNET","term":"Kidney (Left)"},{"code":"C030030","organ_cui":"C0227613","organ_uberon":"UBERON:0004539","rui_code":"RK","sab":"SENNET","term":"Kidney (Right)"},{"code":"C030031","organ_cui":"C0021851","organ_uberon":"UBERON:0000059","rui_code":"LI","sab":"SENNET","term":"Large Intestine"},{"code":"C030032","organ_cui":"C0023884","organ_uberon":"UBERON:0002107","rui_code":"LV","sab":"SENNET","term":"Liver"},{"code":"C030034","organ_cui":"C0225730","organ_uberon":"UBERON:0002168","rui_code":"LL","sab":"SENNET","term":"Lung (Left)"},{"code":"C030035","organ_cui":"C0225706","organ_uberon":"UBERON:0002167","rui_code":"RL","sab":"SENNET","term":"Lung (Right)"},{"code":"C030052","organ_cui":"C0024204","organ_uberon":"UBERON:0000029","rui_code":"LN","sab":"SENNET","term":"Lymph Node"},{"code":"C030036","organ_cui":"C4083049","organ_uberon":"UBERON:0005090","rui_code":"MU","sab":"SENNET","term":"Muscle"},{"code":"C030039","organ_cui":"SENNET:C030039 CUI","organ_uberon":null,"rui_code":"OT","sab":"SENNET","term":"Other"},{"code":"C030038","organ_cui":"C0227874","organ_uberon":"UBERON:0002119","rui_code":"LO","sab":"SENNET","term":"Ovary (Left)"},{"code":"C030041","organ_cui":"C0227873","organ_uberon":"UBERON:0002118","rui_code":"RO","sab":"SENNET","term":"Ovary (Right)"},{"code":"C030054","organ_cui":"C0030274","organ_uberon":"UBERON:0001264","rui_code":"PA","sab":"SENNET","term":"Pancreas"},{"code":"C030055","organ_cui":"C0032043","organ_uberon":"UBERON:0001987","rui_code":"PL","sab":"SENNET","term":"Placenta"},{"code":"C030040","organ_cui":"C1123023","organ_uberon":"UBERON:0002097","rui_code":"SK","sab":"SENNET","term":"Skin"},{"code":"C030072","organ_cui":"C0040113","organ_uberon":"UBERON:0002370","rui_code":"TH","sab":"SENNET","term":"Thymus"}]