Merge pull request #148 from selkamand/147-convert-gg1d-legend_title_…

…beautify-argument-to-beautify_text fix: dropped hanging ... arg
selkamand · Nov 20, 2024 · a0981fe · a0981fe
2 parents 10514d8 + c261678
commit a0981fe
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -13,7 +13,7 @@ Description: Generate oncoplots from tabular mutational data.
 License: MIT + file LICENSE
 Encoding: UTF-8
 LazyData: true
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Imports: 
     assertions (>= 0.0.0.9000),
     cli,

diff --git a/R/oncoplot.R b/R/oncoplot.R
@@ -50,7 +50,6 @@ utils::globalVariables(
 #' @param verbose verbose mode (flag, default TRUE)
 #' @param options a list of additional visual parameters created by calling [ggoncoplot_options()]. See \code{\link{ggoncoplot_options}} for details.
 #'
-#' @inheritDotParams gg1d::gg1d
 #'
 #' @return ggplot or girafe object if \code{interactive=TRUE}
 #' @export
@@ -118,8 +117,7 @@ ggoncoplot <- function(data,
                        total_samples = c('any_mutations', 'all', 'oncoplot'),
                        interactive = TRUE,
                        options = ggoncoplot_options(),
-                       verbose = TRUE,
-                       ...
+                       verbose = TRUE
                        ) {
 
 

diff --git a/man/ggoncoplot.Rd b/man/ggoncoplot.Rd
diff --git a/vignettes/manual.Rmd b/vignettes/manual.Rmd
@@ -400,7 +400,6 @@ ggoncoplot <- brca_df |>
         HER2 = c("Indeterminate" = "gray80", Equivocal =  "grey80", "Negative" = "black", "Positive" = "#DF536B", "[Not Evaluated]" = "grey90"),
         Classification = c("Ambiguous" = "gray80", "Triple Negative" = "black", "Not Triple Negative" = "#ff0000")
         ),
-    relative_height_numeric = 2.5,
     options = ggoncoplot_options(
       show_genebar_labels = TRUE, 
       plotsize_metadata_rel_height = 40,