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docs: fixed interaction with other packages text
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selkamand committed Jul 16, 2024
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copy = 'gene' # see ?ggoncoplot for other valid values
)
```

## Customising the look

Want more control over look of an oncoplot? ggoncoplot takes an `options` argument to help control all visual paramaters. See `?ggoncoplot_options` for a full list of paramaters.
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## Interaction with other packages

ggoncoplot outputs can be combined with other packages. Simply set interactive = FALSE so ggoncoplot returns a ggplot object instead of a ggiraph. Do the same for express. Then you can con
ggoncoplot outputs can be combined with other packages. Simply set interactive = FALSE so ggoncoplot returns a ggplot object instead of a ggiraph. Do the same for the express package which visualises TCGA methylation and expression t-SNE. Then you can use patchwork to compose the plots into a single visualisation make the entire group interactive with data linked across plots.

```{r}
## Create a Breast Cancer Oncoplot
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