fix: updated description to include express suggest + roxygen doc fix

selkamand · May 23, 2024 · 10b304e · 10b304e
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Showing 4 changed files with 4 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -34,6 +34,7 @@ URL: https://github.com/selkamand/ggoncoplot,
 BugReports: https://github.com/selkamand/ggoncoplot/issues
 Suggests: 
     covr,
+    express,
     knitr,
     rmarkdown,
     testthat (>= 3.0.0),

diff --git a/R/oncoplot.R b/R/oncoplot.R
@@ -68,7 +68,7 @@ utils::globalVariables(c("Gene", "MutationType", "Pathway", "Sample", "Tooltip",
 #' @param show_axis_gene show x axis line/ticks/labels for gene barplot (flag)
 #' @param show_axis_tmb show y axis line/ticks/labels for TMB barplot (flag)
 #' @param cols_to_plot_metadata names of columns in metadata that should be plotted (character)
-#' @param pathway a two column dataframe describing pathway. The column containing gene names should have the same name as {col_gene}
+#' @param pathway a two column dataframe describing pathway. The column containing gene names should have the same name as \strong{col_gene}
 #' @param col_genes_pathway which column in pathay data.frame describes gene names
 #' @param colour_pathway_text colour of text describing pathways
 #' @param colour_pathway_bg background fill colour of pathway strips

diff --git a/man/ggoncoplot.Rd b/man/ggoncoplot.Rd
diff --git a/man/ggoncoplot_prep_df.Rd b/man/ggoncoplot_prep_df.Rd