Fix numpy depreciated np.product and OverflowError error on uint8 mask #30
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| name: Github Actions | |
| env: | |
| PACKAGE: pyvims | |
| PYTHON: '3.10' | |
| on: | |
| pull_request: | |
| push: | |
| paths: | |
| - '**.py' | |
| - '!**/__version__.py' | |
| - '.github/workflows/actions.yml' | |
| jobs: | |
| flake8: | |
| name: Flake8 | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Python ${{ env.PYTHON }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ env.PYTHON }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 | |
| - name: Flake8 | |
| run: flake8 $PACKAGE/ tests/ | |
| tests: | |
| name: Pytest | |
| runs-on: ubuntu-latest | |
| env: | |
| PYTEST_ADDOPTS: --color=yes | |
| strategy: | |
| max-parallel: 3 | |
| matrix: | |
| python-version: ['3.7', '3.8', '3.9', '3.10'] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Checkout LFS objects | |
| run: git lfs checkout | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 -r tests/requirements.txt | |
| - name: Lint for errors | |
| run: flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| - name: Install package | |
| run: pip install . | |
| - name: Run unit-tests (no coverage) | |
| run: pytest tests/ | |
| - name: Run jupyter notebook tests | |
| run: pytest --nbval-lax notebooks/pyvims.ipynb notebooks/VIMS_wvlns.ipynb | |
| pypi: | |
| name: Deploy to PyPI | |
| if: contains(github.ref, 'refs/tags/') | |
| needs: [flake8, tests] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Checkout LFS objects | |
| run: git lfs checkout | |
| - name: Set up Python ${{ env.PYTHON }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ env.PYTHON }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel twine | |
| - name: Build package | |
| run: python setup.py sdist bdist_wheel | |
| - name: Publish to PyPI | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }} | |
| run: twine upload $PYPI_REPO dist/* | |
| release: | |
| name: Release to Github | |
| needs: pypi | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Checkout LFS objects | |
| run: git lfs checkout | |
| - name: Create Release | |
| uses: actions/create-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| tag_name: ${{ github.ref }} | |
| release_name: Release ${{ github.ref }} |