How Would OHBM SEA-SIG Responsibly Do Reproducible Analysis

Setup

• Clone the repo:

  $ git clone [email protected]:sebastientourbier/tutorial_carbonfootprint_neuropipelines.git
  

• Install the conda environment with codecarbon, datalad, datalad_containers, jupyter notebook:

  $ cd tutorial_carbonfootprint_neuropipelines
  $ conda env create -f environment.yml
  

• If you are on Mac or Windows, you will need to install the Intel Power Gadget to make codecarbon happy

Run the notebook

• Activate the conda environment, launch Jupyter Notebook, and open the ipython notebook:

  $ conda activate neuropipelines-env
  (neuropipelines-env)$ jupyter notebook