update releases and precommit (#830)

* update releases and precommit * Update template to v0.4.0 (#828) * Update template to v0.4.0 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update --------- Co-authored-by: scverse-bot <None> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: giovp <[email protected]> * update notebooks --------- Co-authored-by: scverse-bot <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
scverse · May 27, 2024 · fb43d62 · fb43d62
1 parent df8e042
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Showing 6 changed files with 15 additions and 8 deletions.
diff --git a/.cruft.json b/.cruft.json
@@ -1,7 +1,7 @@
 {
     "template": "https://github.com/scverse/cookiecutter-scverse",
-    "commit": "586b1652162ff7994b0070a034023d64289ae416",
-    "checkout": "v0.3.1",
+    "commit": "87a407a65408d75a949c0b54b19fd287475a56f8",
+    "checkout": "v0.4.0",
     "context": {
         "cookiecutter": {
             "project_name": "squidpy",

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -7,7 +7,7 @@ default_stages:
 minimum_pre_commit_version: 2.9.3
 repos:
     - repo: https://github.com/pre-commit/mirrors-mypy
-      rev: v1.9.0
+      rev: v1.10.0
       hooks:
           - id: mypy
             additional_dependencies: [numpy, pandas, types-requests]
@@ -46,7 +46,7 @@ repos:
             name: Check executable files use .sh extension
             types: [shell, executable]
     - repo: https://github.com/astral-sh/ruff-pre-commit
-      rev: v0.4.1
+      rev: v0.4.5
       hooks:
           - id: ruff
             types_or: [python, pyi, jupyter]

diff --git a/docs/conf.py b/docs/conf.py
@@ -1,5 +1,5 @@
 # Configuration file for the Sphinx documentation builder.
-#
+
 # This file only contains a selection of the most common options. For a full
 # list see the documentation:
 # https://www.sphinx-doc.org/en/master/usage/configuration.html

diff --git a/docs/notebooks b/docs/notebooks
diff --git a/docs/release/notes-1.4.2.rst b/docs/release/notes-1.4.2.rst
@@ -0,0 +1,9 @@
+Squidpy 1.4.1 (2024-02-06)
+==========================
+
+Bugfixes
+--------
+
+- Unpin ``scikit-image``.
+  `@giovp <https://github.com/giovp>`__
+  `#796 <https://github.com/scverse/squidpy/pull/796>`__
diff --git a/docs/release/notes-dev.rst b/docs/release/notes-dev.rst
@@ -1,4 +1,2 @@
 Squidpy dev (the-future)
 ========================
-- Fixed the reading of 10x formatted mtx files `@LinearParadox <https://github.com/LinearParadox>`__
-  `#803 <https://github.com/scverse/squidpy/pull/803>`__
+2 −2		.pre-commit-config.yaml
+1 −1		tutorials/tutorial_cellprofiler.ipynb
+1 −1		tutorials/tutorial_merfish.ipynb
+1 −1		tutorials/tutorial_stardist.ipynb