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PR related to scverse/spatialdata-io#211 and provides complimentary changes to
spatialdata.rasterize_bins
.See unit test https://github.com/ArneDefauw/spatialdata/blob/5c3edee642bad1eaedbddf2097430315b964bb1a/tests/core/operations/test_rasterize_bins.py#L36
And more in particular https://github.com/ArneDefauw/spatialdata/blob/5c3edee642bad1eaedbddf2097430315b964bb1a/tests/core/operations/test_rasterize_bins.py#L80
Note that even if the table is annotated by a labels layer created by
spatialdata.rasterize_bins
, we want to be able to run theraterize_bins
function, but now withreturn_region_as_labels=True
, see https://github.com/ArneDefauw/spatialdata/blob/5c3edee642bad1eaedbddf2097430315b964bb1a/tests/core/operations/test_rasterize_bins.py#L111.There is a use case for this, e.g. you have leiden cluster ID's, and you want a 'snappy' way to also visualize gene expression levels in napari-spatialdata, see example below: