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normalize_total with numba #3135

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Intron7 opened this issue Jul 2, 2024 · 3 comments
Open

normalize_total with numba #3135

Intron7 opened this issue Jul 2, 2024 · 3 comments
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@Intron7
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Area – Performance 🐌 Enhancement ✨

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@Intron7
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Intron7 commented Jul 2, 2024

What kind of feature would you like to request?

Other?

Please describe your wishes

This would speed up normalization
@Intron7 Intron7 added Enhancement ✨ Triage 🩺 This issue needs to be triaged by a maintainer labels Jul 2, 2024
@Intron7 Intron7 self-assigned this Jul 2, 2024
@ilan-gold
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Waiting for potential work already done on this by intel folks (@ashish615 have you guys worked on this?)

@ashish615
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@Intron7 code for below link may work for only csr matrix.
https://github.com/IntelLabs/Open-Omics-Acceleration-Framework/blob/main/pipelines/single-cell-RNA-seq-analysis/notebooks/fastpp.py#L499-L522

@flying-sheep flying-sheep added Area – Performance 🐌 and removed Triage 🩺 This issue needs to be triaged by a maintainer labels Aug 8, 2024
@ilan-gold
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Implement with or without Intel PR

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@flying-sheep @ashish615 @Intron7 @ilan-gold