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# harmonypy - A data alignment algorithm. | ||
# Copyright (C) 2018 Ilya Korsunsky | ||
# 2019 Kamil Slowikowski <[email protected]> | ||
# 2022 Severin Dicks <[email protected]> | ||
# | ||
# This program is free software: you can redistribute it and/or modify | ||
# it under the terms of the GNU General Public License as published by | ||
# the Free Software Foundation, either version 3 of the License, or | ||
# (at your option) any later version. | ||
# | ||
# This program is distributed in the hope that it will be useful, | ||
# but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
# GNU General Public License for more details. | ||
# | ||
# You should have received a copy of the GNU General Public License | ||
# along with this program. If not, see <https://www.gnu.org/licenses/>. | ||
from __future__ import annotations | ||
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import logging | ||
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ch.setFormatter(formatter) | ||
logger.addHandler(ch) | ||
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# from IPython.core.debugger import set_trace | ||
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# from IPython.core.debugger import set_trace | ||
def run_harmony( | ||
data_mat: np.ndarray, | ||
meta_data: pd.DataFrame, | ||
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