update harmony to new implementation #233
Workflow file for this run
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| # This workflow will build two Docker image and push then to GitHub Packages Container registry: | |
| # - a base image with the dependencies | |
| # - a main image with the application code | |
| name: Docker | |
| on: | |
| push: | |
| branches: [main] | |
| paths: | |
| - 'docker/**' | |
| - '.github/workflows/docker.yml' | |
| - 'conda/*.yml' | |
| - 'pyproject.toml' | |
| pull_request: | |
| branches: [main] | |
| paths: | |
| - 'docker/**' | |
| - '.github/workflows/docker.yml' | |
| - 'conda/*.yml' | |
| - 'pyproject.toml' | |
| release: | |
| types: [published] | |
| jobs: | |
| build_docker_images: | |
| strategy: | |
| matrix: | |
| RAPIDS_VER: | |
| - 24.08 | |
| name: Build Docker images | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| packages: write | |
| contents: read | |
| attestations: write | |
| steps: | |
| - name: Maximize build disk space | |
| uses: easimon/maximize-build-space@v10 | |
| with: | |
| remove-dotnet: true | |
| remove-android: true | |
| remove-haskell: true | |
| remove-codeql: true | |
| root-reserve-mb: 35000 | |
| swap-size-mb: 1048 | |
| - name: Check out the repo | |
| uses: actions/checkout@v4 | |
| - name: Log in to the Container registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker base image | |
| id: meta-base | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: | | |
| ghcr.io/${{ github.repository }}-deps | |
| - name: create yaml file for conda environment | |
| run: | | |
| grep -v -- '- rapids-singlecell' conda/rsc_rapids_${{ matrix.RAPIDS_VER }}.yml > docker/rsc_rapids.yml | |
| shell: bash | |
| - name: Build and push Docker base images | |
| id: push-base | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: ./docker/ | |
| file: ./docker/Dockerfile.deps | |
| push: ${{ github.event_name == 'release' }} | |
| tags: ${{ steps.meta-base.outputs.tags }} | |
| labels: ${{ steps.meta-base.outputs.labels }} | |
| #cache-from: type=registry,ref=ghcr.io/${{ github.repository }}-deps | |
| - name: Generate artifact attestation for base image | |
| if: github.event_name == 'release' | |
| uses: actions/attest-build-provenance@v1 | |
| with: | |
| subject-name: ghcr.io/${{ github.repository }}-deps | |
| subject-digest: ${{ steps.push-base.outputs.digest }} | |
| push-to-registry: true | |
| - name: Extract metadata (tags, labels) for main Docker image | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: | | |
| ghcr.io/${{ github.repository }} | |
| - name: Build and push main Docker images | |
| id: push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: ./docker/ | |
| file: ./docker/Dockerfile | |
| push: ${{ github.event_name == 'release' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| #cache-from: type=registry,ref=ghcr.io/${{ github.repository }} | |
| build-contexts: | | |
| rapids-singlecell-deps=docker-image://${{ fromJSON(steps.meta-base.outputs.json).tags[0] }} | |
| - name: Generate artifact attestation for main image | |
| if: github.event_name == 'release' | |
| uses: actions/attest-build-provenance@v1 | |
| with: | |
| subject-name: ghcr.io/${{ github.repository }} | |
| subject-digest: ${{ steps.push.outputs.digest }} | |
| push-to-registry: true | |
| - name: list docker images | |
| run: | | |
| docker image ls -a | |
| shell: bash |