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[DEPENDABOT]: Bump mypy from 1.4.1 to 1.5.0 #341

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merged 1 commit into from
Aug 17, 2023

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@dependabot dependabot bot commented on behalf of github Aug 14, 2023

Bumps mypy from 1.4.1 to 1.5.0.

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Bumps [mypy](https://github.com/python/mypy) from 1.4.1 to 1.5.0.
- [Commits](python/mypy@v1.4.1...v1.5.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@Zethson Zethson merged commit fb78f1d into development Aug 17, 2023
14 of 18 checks passed
@dependabot dependabot bot deleted the dependabot/pip/development/mypy-1.5.0 branch August 17, 2023 08:17
Zethson added a commit that referenced this pull request Aug 21, 2023
* RTD config

Signed-off-by: zethson <[email protected]>

* RTD config

Signed-off-by: zethson <[email protected]>

* RTD config (#333)

* RTD config

Signed-off-by: zethson <[email protected]>

* RTD config

Signed-off-by: zethson <[email protected]>

* RTD config

Signed-off-by: zethson <[email protected]>

* RTD config

Signed-off-by: zethson <[email protected]>

---------

Signed-off-by: zethson <[email protected]>

* Update CellLineMetaData (#334)

* update cell line annotation

* add LookUp object

* pass nox test

* fix test

* keep downloaded files

* improve error message and lookup initialize

* add annotate_from_gdsc

* add metadata source in the docstring

* fix typo

* update test script and speed up downloading metadata

* add remotezip dependency

* parametrize Pytest fixture

* fix import error

* poetry update

Signed-off-by: zethson <[email protected]>

* Fix fixture

Signed-off-by: zethson <[email protected]>

* fix test error

* Refactor

Signed-off-by: zethson <[email protected]>

* Refactor

Signed-off-by: zethson <[email protected]>

* Refactor

Signed-off-by: zethson <[email protected]>

* improve LookUp object

* add openpyxl

Signed-off-by: zethson <[email protected]>

* update lookup

* replace dict with namedtuple

---------

Signed-off-by: zethson <[email protected]>
Co-authored-by: Lukas Heumos <[email protected]>

* Remove whitespace in bulk RNA expression (#337)

* remove whitespace in bulk RNA annotation

* reformat

* add details of random whitespace issue

* [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.8 to 1.8.10 (#342)

Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.8 to 1.8.10.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.8...v1.8.10)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* [DEPENDABOT]: Bump mypy from 1.4.1 to 1.5.0 (#341)

Bumps [mypy](https://github.com/python/mypy) from 1.4.1 to 1.5.0.
- [Commits](python/mypy@v1.4.1...v1.5.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* [DEPENDABOT]: Bump coverage from 7.2.7 to 7.3.0 (#340)

Bumps [coverage](https://github.com/nedbat/coveragepy) from 7.2.7 to 7.3.0.
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.2.7...7.3.0)

---
updated-dependencies:
- dependency-name: coverage
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Python 3.11 support

Signed-off-by: zethson <[email protected]>

* palette support for da_neighborhoods (#343)

* palette support for da_neighborhoods

Signed-off-by: zethson <[email protected]>

* Remove custom css

Signed-off-by: zethson <[email protected]>

---------

Signed-off-by: zethson <[email protected]>

* Fix #284

Signed-off-by: zethson <[email protected]>

* Switch to scverse cookiecutter (#349)

* Remove cookietemple

Signed-off-by: zethson <[email protected]>

* pre-commit

Signed-off-by: zethson <[email protected]>

* pyproject toml

Signed-off-by: zethson <[email protected]>

* pre-commit

Signed-off-by: zethson <[email protected]>

* Add new wfs

Signed-off-by: zethson <[email protected]>

* RTD config

Signed-off-by: zethson <[email protected]>

* references

Signed-off-by: zethson <[email protected]>

---------

Signed-off-by: zethson <[email protected]>

* RTD config

Signed-off-by: zethson <[email protected]>

* sphinx-design

Signed-off-by: zethson <[email protected]>

---------

Signed-off-by: zethson <[email protected]>
Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Xichen Wu <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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