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Refactor fragments #20

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Refactor fragments #20

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Commits on Nov 13, 2020

  1. Allow underscore in region strings

    @mffrank
    mffrank committed Nov 13, 2020
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  2. Move fragment functions to fragments.py

    @mffrank
    mffrank committed Nov 13, 2020
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  3. Add function to get atac mod

    @mffrank
    mffrank committed Nov 13, 2020
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  4. Cleanup fragment methods

    @mffrank
    mffrank committed Nov 13, 2020
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Commits on Nov 19, 2020

  1. fix function imports

    @mffrank
    mffrank committed Nov 19, 2020
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Commits on Dec 17, 2020

  1. Move fragments function into its own module

    @mffrank
    mffrank committed Dec 17, 2020
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  2. Add minimal test object

    @mffrank
    mffrank committed Dec 17, 2020
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  3. Add tests for the fragments functions

    @mffrank
    mffrank committed Dec 17, 2020
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  4. Blacken files

    @mffrank
    mffrank committed Dec 17, 2020
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  5. Fix tests

    @mffrank
    mffrank committed Dec 17, 2020
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  6. Fix build error,

    @mffrank
    mffrank committed Dec 17, 2020
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  7. pytest runs with root wd

    @mffrank
    mffrank committed Dec 17, 2020
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  8. Close even if no file found

    @mffrank
    mffrank committed Dec 17, 2020
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  9. Fix test dataset

    @mffrank
    mffrank committed Dec 17, 2020
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  10. Merge branch 'master' into refactor_fragments

    @mffrank
    mffrank authored Dec 17, 2020
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Commits on Jan 29, 2023

  1. Improvements to the atac module

    @gtca
    gtca committed Jan 29, 2023
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  2. Merge branch 'master' into refactor_fragments

    @gtca
    gtca committed Jan 29, 2023
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  3. Formatting

    @gtca
    gtca committed Jan 29, 2023
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  4. Fix imports

    @gtca
    gtca committed Jan 29, 2023
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  5. Fix imports

    @gtca
    gtca committed Jan 29, 2023
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  6. Fix imports

    @gtca
    gtca committed Jan 29, 2023
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