(feat): add nightly cron job #8
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name: Integration test | |
on: | |
schedule: | |
- cron: "0 0 * * *" | |
push: | |
branches: [main] | |
pull_request: | |
branches: [main] | |
# Cancel the job if new commits are pushed | |
# https://stackoverflow.com/questions/66335225/how-to-cancel-previous-runs-in-the-pr-when-you-push-new-commitsupdate-the-curre | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
strategy: | |
fail-fast: false | |
matrix: | |
python: ["3.10", "3.12"] | |
package: ["mudata"] # , "spatialdata", "scirpy", "muon", "scanpy" | |
defaults: | |
run: | |
shell: bash -el {0} | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
repository: scverse/${{ matrix.package }} | |
- name: Install Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python }} | |
- name: Install UV | |
uses: hynek/setup-cached-uv@v2 | |
- name: Install AnnData + test dep | |
run: | | |
uv pip install --system ".[test]" git+https://github.com/scverse/anndata pytest-xdist | |
- name: Env list | |
run: uv pip freeze | |
- name: Run test | |
run: pytest -n auto |