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This repository has been archived by the owner on Dec 15, 2020. It is now read-only.

Releases: scitran-apps/dcm2niix

0.8.0_1.0.20200331

28 May 14:07
@lmperry lmperry
0.8.0_1.0.20200331
84d4940
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0.8.0_1.0.20200331 Latest
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Enhancements and Upgrades

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0.8.0_1.0.20190902

28 Feb 22:18
@lmperry lmperry
0.8.0_1.0.20190902
465b1e6
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0.8.0_1.0.20190902

Enhancements and upgrades

  • Upgrade dcm2niix to version 20190902
  • Upgrade pydicom to 1.4.2.
  • Move base image to xenial
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Added correction for partial volume acquisition

24 Jan 17:54
@dpark6060 dpark6060
0.7.10_1.0.20190410
41fb0df
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Added correction for partial volume acquisition

In some instances, an fMRI acquisition is cut off mid-acquisition, resulting in an incomplete volume. This causes problems with basic dcm2niix reconstruction. Using python code from the vision and cognition lab (https://github.com//VisionandCognition/NHP-Process-MRI), this problem is addressed by removing the dicom files associated with the incomplete volume.

An optional config setting is added to the gear that will attempt to correct for this issue.

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Respect %f variants when DICOM zip does not contain subdirectories

07 Nov 15:18
@kalebdfischer kalebdfischer
0.7.9_1.0.20190410
3cadf78
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Respect %f variants when DICOM zip does not contain subdirectories

This update adds logic to create a directory named after the input DICOM zip if %f appears in the filename formatter. Non-alphanumerics are replaced with _ in this directory name.

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0.7.8_1.0.20190410

10 Jul 20:44
@lmperry lmperry
0.7.8_1.0.20190410
f41b2b9
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0.7.8_1.0.20190410
  • Upgrade dcm2niix algo to 1.0.20190410
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0.7.8_1.0.20181114

20 Mar 23:10
@lmperry lmperry
0.7.8_1.0.20181114
0d06b48
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0.7.8_1.0.20181114

NEW

  • Adds coil_combine configuration option. For sequences with individual coil data, saved as individual volumes, this option will save a NIfTI file with ONLY the combined coil data (i.e., the last volume). Default=False. Warning: We make no effort to check for independent coil data, we simply trust that if you have selected this option you know what you are asking for.
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0.7.7_1.0.20181114

26 Feb 23:47
@lmperry lmperry
0.7.7_1.0.20181114
5a916ad
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0.7.7_1.0.20181114

NEW

FIXES

  • Force standard naming conventions for input PAR/REC datasets.
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0.7.6_1.0.20180622_5af76a9

14 Dec 05:52
@lmperry lmperry
0.7.6_1.0.20180622_5af76a9
2cf0b89
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0.7.6_1.0.20180622_5af76a9

FIXES

  • Issue caused by OSX generated zip files containing __MACOSX subdirectories (ref).
Assets 2
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0.7.5_1.0.20180622_5af76a9

14 Dec 22:25
@lmperry lmperry
0.7.5_1.0.20180622_5af76a9
1c92124
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0.7.5_1.0.20180622_5af76a9

FIXES

  • Updated RE + logic to fix an issue where non-standard input filenames would result in the bids sidecar file not being saved.

NEW

  • Print generated metadata to STDOUT
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0.7.0_1.0.20180622

31 Jul 22:22
@lmperry lmperry
0.7.0_1.0.20180622
9dc19cb
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0.7.0_1.0.20180622

NEW

  • Does not run as root user. Executes dcm2niix run script as u=flywheel
Assets 2
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