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Change channel order #20

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merged 1 commit into from
Sep 1, 2023
+2 −2
Merged

Change channel order #20

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4 changes: 2 additions & 2 deletions main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,7 @@ workflow.onComplete {
Channel
.fromFilePairs("$params.input/**/bundles/*.trk",
size: -1) { it.parent.parent.name }
.into{bundles_for_rm_invalid; in_bundles_check; bundles_for_fixel_afd}
.into{bundles_for_rm_invalid; in_bundles_check}

Channel
.fromFilePairs("$params.input/**/metrics/*.nii.gz",
Expand Down Expand Up @@ -137,7 +137,7 @@ process Remove_Invalid_Streamlines {
set sid, file(bundles) from bundles_for_rm_invalid

output:
set sid, "${sid}__*_ic.trk" into bundles_for_label_and_distance_map, bundles_for_centroids
set sid, "${sid}__*_ic.trk" into bundles_for_label_and_distance_map, bundles_for_centroids, bundles_for_fixel_afd

script:
String bundles_list = bundles.join(", ").replace(',', '')
Expand Down