Added OLO to reorder_connectivity #630
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arnaudbore
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Add a new automatic ordering method (to go from sparse matrix to dense along the diagonal). This works best on thresholded matrices.
The OLO has to be computed on a single matrix (--optimal_leaf_ordering) and then apply to all others (--in_ordering).
The previous behavior still works. --in_ordering is still a text file with two rows of integers to do the indexing in X and then Y (supports non-square output)
The behavior for the output filename convention changed a bit, before if you called the script with:
scil_reorder_connectivity.py */*.npy --in_ordering config.txt --out_suffix _reoit would create all the matrices with a suffix in the current folder, now they are saved with the suffix in their original folder. To mimic the previous behavior:
scil_reorder_connectivity.py */*.npy --in_ordering config.txt --out_suffix _reo --out_dir ./