WIP - Update scilpy & tractometry #2
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frheault
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Don't tested yet. A small comment about naming convention. Don't tested yet. @frheault Could you give me the path of the singularity used for this PR or at least scilpy commit number ?
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The pipeline crash. Maybe a too old version of the models ?
File "/usr/local/lib/python3.7/dist-packages/scilpy-0.2.dev0-py3.7-linux-x86_64.egg/scilpy/segment/voting_scheme.py", line 73, in _init_bundles_tag
for key in self.config.keys():
AttributeError: 'list' object has no attribute 'keys'
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@GuillaumeTh Done |
| @@ -11,7 +11,7 @@ DESCRIPTION | |||
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| [root] | |||
| ├── S1 | |||
| │ ├── *anat.nii.gz | |||
| │ ├── *fa.nii.gz | |||
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Does it really need to be an FA?
For instance, in my test case, I have b0 and I believe it should work, no?
Can you add something in the help about that please?
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Also,
- Can you provide a link to your zenodo URL please
- Can you add a centroids directory or download on the zenodo?
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Finally, a lot of our flows use --root, others use --input. Can we harmonize this?
--input or --root?
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It should work with anything, but I want to leave *fa.nii.gz as an input name
Adaptation to the recent modification in scilpy