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catanzaromj committed Jun 29, 2024
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# Release log


## Unreleased

### Added

- ability to live-update the min-intersection threshold for edges on the d3 vis (#231)

### Fixed/Changed

- Update docs and sphinx-gallery to build again.
- Update CI/CD runners to test modern versions of python; drop python 3.7 compatibility.
- Change visual tests to use built-in `int` type rather than `np.uint8`.

## 2.0.1

Expand All @@ -22,7 +27,6 @@
during an AND or OR search query again directly reflects the number of items within the node. (#227)
- The default search mode is now AND -- because that's the expected behavior, because that's how the google works (#227)


## 2.0.0

### Visualization
Expand All @@ -46,7 +50,7 @@ All of the below changes apply to kmapper's D3 html visualization.
- multiple `color_values` arrays can be passed, and switched between interactively in the display.
- the node color function can be specified, as a string, to any function available on the numpy base class (e.g.,
'mean', 'median', 'max', 'min'. (Before, the only available function was `np.mean`.
- Multiple node color functions can be specified, and toggled between interactively in the display.
- Multiple node color functions can be specified, and toggled between interactively in the display.
- The toolbar display now uses css flexbox, which avoids overlap-problems on smaller viewports.

### Kmapper
Expand All @@ -55,63 +59,73 @@ All of the below changes apply to kmapper's D3 html visualization.
- only support python >= 3.6

## 1.4.1

- New CI/CD pipeline

## 1.4

- More flexible visualization coloring (PR 190)
- Better support for sparse matrices (PR 189)
- Better support for precomputed distance matrices (PR 184)

## 1.3.x

- A series of releases to support JOSS submission

## 1.3.0 (October 12, 2019)

- JOSS Release -- final revision
- Allow sparse matrices in `map` function (PR #163)
- Use sphinx-gallery for documentation examples (#164)
- Removed mutable arguments (#165)

## 1.2.0 (Feb 18, 2019)

- New implementation of the cover API makes it consistent with the literature (your % overlap will probably have to be decreased when updating).
- New documentation website (kepler-mapper.scikit-tda.org).

## 1.1.6 (Nov 8, 2018)

- Plotly visualization interface.
- Networkx adapter
- Bug fixes
- Scikit-tda integration

## 1.1.2

- Bug fix, setup.py did not include static directory so installation visualizations did not work when installed from pypi.
- Add Jupyter notebook support

## 1.1

- Massive visualization upgrades
- Separation of HTML, JS, CSS, and Python code
- New nerves and covers API
- Documentation site

## 1.0.1

- Convert versioning scheme to major.minor.micro
- Restructure library to be compatible with PyPi installation
- Minor bug fixes
- Include preliminary unit test suite
- Refactor, extract helper classes and helper functions


# Release log - Pre-alpha

## v00009

## v00008

## v00007

- Add L2^Norm Lens
- Add Winsconsin Breast Cancer Data Anomaly Detection Example
- Fixed bug: k-means with set number of clusters higher than min_cluster_samples
- Add self.inverse_X for new future feature: transforming on unseen data.

## v00006

- Removed link_local functionality
- Halved the number of edges drawn (no two-way edges)
- Added support for clustering on the inverse image
Expand All @@ -121,20 +135,23 @@ All of the below changes apply to kmapper's D3 html visualization.
- Added 7 projections/lenses from statistics

## v00005

- Made Python 3 compatible
- Ability to turn off title, meta and tooltips
- Ability to set the window height and width of HTML output
- Added basic support for another color function: average signal
- De-emphasized link_local functionality, since its current implementation is no good.

## v00004

- Added dimensionality reduction
- Added "digits" case study
- changed fit to fit_transform and return of data
- added tooltips
- added support for custom tooltips

## v00003

- Refactored dimension index to use a list of arbitrary dimensions
- Improved verbosity
- Added levels of verbosity
Expand All @@ -144,6 +161,7 @@ All of the below changes apply to kmapper's D3 html visualization.
- Added a gallery in the example directory

## v00002

- Added a multi-dimensional mode: use all dimensions.
- Added case study: 3D point cloud data for animals
- Added case study: Make circles
Expand All @@ -154,6 +172,7 @@ All of the below changes apply to kmapper's D3 html visualization.
- Added release log

## v00001

- Wrote class
- Wrote documentation
- Added license

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