feat: Add Cramer-rao uncertainties + covariance using autodiff to non-minuit fits by default #4699
Workflow file for this run
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| name: Docs | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| name: Build docs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install uv | |
| uv pip --quiet install --system --upgrade ".[docs,test]" | |
| uv pip install --system yq | |
| python -m pip list | |
| - name: Install apt-get dependencies | |
| run: | | |
| sudo apt-get update | |
| # Ubuntu 22.04's pandoc is too old (2.9.2.x), so install manually | |
| # until the ubuntu-latest updates. | |
| curl --silent --location --remote-name https://github.com/jgm/pandoc/releases/download/3.1.6.2/pandoc-3.1.6.2-1-amd64.deb | |
| sudo apt-get install ./pandoc-*amd64.deb | |
| - name: Check docstrings | |
| run: | | |
| # Group 1 is related to docstrings | |
| pydocstyle --select D1 src/pyhf/pdf.py \ | |
| src/pyhf/workspace.py \ | |
| src/pyhf/probability.py \ | |
| src/pyhf/patchset.py \ | |
| src/pyhf/compat.py \ | |
| src/pyhf/interpolators \ | |
| src/pyhf/infer \ | |
| src/pyhf/optimize \ | |
| src/pyhf/contrib \ | |
| src/pyhf/cli | |
| - name: Verify CITATION.cff schema | |
| run: | | |
| jsonschema <(curl -sL "https://citation-file-format.github.io/1.2.0/schema.json") --instance <(cat CITATION.cff | yq) | |
| - name: Check for broken links | |
| run: | | |
| pushd docs | |
| make linkcheck | |
| # Don't ship the linkcheck | |
| rm -r _build/linkcheck | |
| popd | |
| - name: Test and build docs | |
| run: | | |
| python -m doctest README.rst | |
| pushd docs | |
| make html | |
| - name: Check schemas are copied over | |
| run: | | |
| # is a directory | |
| [ -d "docs/_build/html/schemas" ] | |
| # is not a symlink | |
| [ ! -L "docs/_build/html/schemas" ] | |
| # is not empty | |
| [ "$(ls -A docs/_build/html/schemas)" ] | |
| # is not empty | |
| [ "$(ls -A docs/_build/html/lite)" ] | |
| - name: Fix permissions if needed | |
| run: | | |
| chmod -c -R +rX "docs/_build/html/" | while read line; do | |
| echo "::warning title=Invalid file permissions automatically fixed::$line" | |
| done | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: 'docs/_build/html' | |
| deploy: | |
| name: Deploy docs to GitHub Pages | |
| if: github.event_name == 'push' && github.ref == 'refs/heads/main' | |
| needs: build | |
| # Set permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Setup Pages | |
| uses: actions/configure-pages@v5 | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |