Added support for ComputeSegmentIndexFile worker job

app/controllers/JobsController.scala

@@ -161,6 +161,33 @@ class JobsController @Inject()(
       } yield Ok(js)
     }
 
+  def runComputeSegmentIndexJob(organizationName: String,
+                                dataSetName: String,
+                                layerName: String,
+                                mag: String,
+                                agglomerateView: Option[String]): Action[AnyContent] =
+    sil.SecuredAction.async { implicit request =>
+      for {
+        organization <- organizationDAO.findOneByName(organizationName)(GlobalAccessContext) ?~> Messages(
+          "organization.notFound",
+          organizationName)
+        _ <- bool2Fox(request.identity._organization == organization._id) ?~> "job.segmentIndexFile.notAllowed.organization" ~> FORBIDDEN
+        dataSet <- datasetDAO.findOneByNameAndOrganization(dataSetName, organization._id) ?~> Messages(
+          "dataset.notFound",
+          dataSetName) ~> NOT_FOUND
+        command = JobCommand.compute_segment_index_file
+        commandArgs = Json.obj(
+          "organization_name" -> organizationName,
+          "dataset_name" -> dataSetName,
+          "segmentation_layer_name" -> layerName,
+          "mag" -> mag,
+          "agglomerate_view" -> agglomerateView
+        )
+        job <- jobService.submitJob(command, commandArgs, request.identity, dataSet._dataStore) ?~> "job.couldNotRunSegmentIndexFile"
+        js <- jobService.publicWrites(job)
+      } yield Ok(js)
+    }
+
   def runInferNucleiJob(organizationName: String,
                         dataSetName: String,
                         layerName: String,

app/models/job/JobCommand.scala

@@ -5,6 +5,6 @@ import com.scalableminds.util.enumeration.ExtendedEnumeration
 object JobCommand extends ExtendedEnumeration {
   type JobCommand = Value
 
-  val compute_mesh_file, convert_to_wkw, export_tiff, find_largest_segment_id, globalize_floodfills, infer_nuclei,
-  infer_neurons, materialize_volume_annotation, render_animation = Value
+  val compute_mesh_file, compute_segment_index_file, convert_to_wkw, export_tiff, find_largest_segment_id,
+  globalize_floodfills, infer_nuclei, infer_neurons, materialize_volume_annotation, render_animation = Value
 }

conf/messages

@@ -296,6 +296,7 @@ initialData.organizationsNotEmpty=There are already organizations present in the
 job.couldNotRunCubing = Failed to start WKW conversion job.
 job.couldNotRunTiffExport = Failed to start Tiff export job.
 job.couldNotRunComputeMeshFile = Failed to start mesh file computation job.
+job.couldNotRunComputeSegmentIndexFile = Failed to start segment index computation job.
 job.couldNotRunNucleiInferral = Failed to start nuclei inferral job.
 job.couldNotRunNeuronInferral = Failed to start neuron inferral job.
 job.couldNotRunGlobalizeFloodfills = Failed to start job for globalizing floodfills.
@@ -310,6 +311,7 @@ job.edgeLengthExceeded = An edge length of the selected bounding box is too larg
 job.inferNuclei.notAllowed.organization = Currently nuclei inferral is only allowed for datasets of your own organization.
 job.inferNeurons.notAllowed.organization = Currently neuron inferral is only allowed for datasets of your own organization.
 job.meshFile.notAllowed.organization = Calculating mesh files is only allowed for datasets of your own organization.
+job.segmentIndexFile.notAllowed.organization = Calculating segment index files is only allowed for datasets of your own organization.
 job.globalizeFloodfill.notAllowed.organization = Globalizing floodfills is only allowed for datasets of your own organization.
 job.materializeVolumeAnnotation.notAllowed.organization = Materializing volume annotations is only allowed for datasets of your own organization.
 job.noWorkerForDatastore = Processing jobs are not available for the datastore this dataset belongs to.

conf/webknossos.latest.routes

@@ -267,6 +267,7 @@ GET           /jobs
 GET           /jobs/status                                                                      controllers.JobsController.status()
 POST          /jobs/run/convertToWkw/:organizationName/:dataSetName                             controllers.JobsController.runConvertToWkwJob(organizationName: String, dataSetName: String, scale: String)
 POST          /jobs/run/computeMeshFile/:organizationName/:dataSetName                          controllers.JobsController.runComputeMeshFileJob(organizationName: String, dataSetName: String, layerName: String, mag: String, agglomerateView: Option[String])
+POST          /jobs/run/computeSegmentIndexFile/:organizationName/:dataSetName                  controllers.JobsController.runComputeSegmentIndexJob(organizationName: String, dataSetName: String, layerName: String, mag: String, agglomerateView: Option[String])
 POST          /jobs/run/exportTiff/:organizationName/:dataSetName                               controllers.JobsController.runExportTiffJob(organizationName: String, dataSetName: String, bbox: String, layerName: Option[String], mag: Option[String], annotationLayerName: Option[String], annotationId: Option[String], asOmeTiff: Boolean)
 POST          /jobs/run/inferNuclei/:organizationName/:dataSetName                              controllers.JobsController.runInferNucleiJob(organizationName: String, dataSetName: String, layerName: String, newDatasetName: String)
 POST          /jobs/run/inferNeurons/:organizationName/:dataSetName                             controllers.JobsController.runInferNeuronsJob(organizationName: String, dataSetName: String, layerName: String, bbox: String, newDatasetName: String)