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Fixing this to comply with latest changes to discretewq package
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sbashevkin committed Feb 10, 2022
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Expand Up @@ -51,6 +51,6 @@ Remotes:
InteragencyEcologicalProgram/zooper,
InteragencyEcologicalProgram/deltamapr,
sbashevkin/discretewq
RoxygenNote: 7.1.1
RoxygenNote: 7.1.2
Language: en-US
VignetteBuilder: knitr
15 changes: 2 additions & 13 deletions R/DeltaDater.R
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Expand Up @@ -6,17 +6,7 @@
#' @param Variables Character vector of variables you would like included in the dataset.
#' Defaults to all possible options: \code{Variables = c("Bivalves", "Zooplankton", "Phytoplankton", "Water quality")}.
#' @param WQ_sources Character vector of data sources for the water quality variables, pulled from the \code{\link[discretewq]{discretewq}} package.
#' Choices include "EMP" (Environmental Monitoring Program, \code{\link[discretewq]{EMP}}),
#' "STN" (Summer Townet Survey, \code{\link[discretewq]{STN}}),
#' "FMWT" (Fall Midwater Trawl, \code{\link[discretewq]{FMWT}}),
#' "EDSM" (Enhanced Delta Smelt Monitoring, \code{\link[discretewq]{EDSM}}),
#' "DJFMP" (Delta Juvenile Fish Monitoring Program, \code{\link[discretewq]{DJFMP}}),
#' "20mm" (20mm Survey, \code{\link[discretewq]{twentymm}}),
#' "SKT" (Spring Kodiak Trawl, \code{\link[discretewq]{SKT}}),
#' "Baystudy" (Bay Study, \code{\link[discretewq]{baystudy}}),
#' "USGS" (USGS San Francisco Bay Surveys, \code{\link[discretewq]{USGS}}),
#' "USBR" (United States Bureau of Reclamation Sacramento Deepwater Ship Channel data, \code{\link[discretewq]{USBR}}), and
#' "Suisun" (Suisun Marsh Fish Study, \code{\link[discretewq]{suisun}}).
#' See \code{\link[discretewq]{wq}} for choices.
#' @param Shapefile Shapefile you would like used to define regions in the dataset. Must be in \code{\link[sf]{sf}} format, e.g., imported with \code{\link[sf]{st_read}}. Defaults to \code{\link[deltamapr]{R_EDSM_Strata_1819P1}}.
#' @param Region_column Quoted name of the column in the Shapefile with the region designations.
#' @param Regions Character vector of regions to be included in the dataset. Must correspond with levels of the \code{Region_column}. To include all data points regardless of whether they correspond to a region in the \code{Shapefile} set \code{Regions = NULL}.
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#' @return A list of datasets
#' @examples
#' Data <- DeltaDater(Start_year = 1900,
#' WQ_sources = c("EMP", "STN", "FMWT", "EDSM", "DJFMP", "SKT",
#' "20mm", "Suisun", "Baystudy", "USBR", "USGS"),
#' WQ_sources = c("EMP", "STN", "FMWT", "EDSM", "SKT", "20mm", "Suisun"),
#' Variables = "Water quality",
#' Regions = NULL)
#' @export
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15 changes: 2 additions & 13 deletions man/DeltaDater.Rd

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