update

sbalci · Dec 10, 2021 · d7eae22 · d7eae22
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diff --git a/.unotes/unotes_meta.json b/.unotes/unotes_meta.json
@@ -10,25 +10,48 @@
         "computer-programs-and-applications": 0,
         "books": 1,
         "courses-and-moocs": 2,
-        "deneme": 3,
-        "deutsche-artikel": 4,
-        "github-repositories": 5,
-        "videos": 6,
-        "web-pages": 7,
-        "yazmayipdabeslesemiydik": 8
+        "deutsche-artikel": 3,
+        "github-repositories": 4,
+        "videos": 5,
+        "web-pages": 6
       }
     },
     "autopsy": {
       "name": "autopsy",
       "isOrdered": true,
       "folders": {},
-      "files": {}
+      "files": {
+        "autopsy": 0,
+        "autopsy-articles": 1
+      }
     },
     "bibliometrics": {
       "name": "bibliometrics",
       "isOrdered": true,
-      "folders": {},
-      "files": {}
+      "folders": {
+        "data-and-tools-for-bibliographic-analysis": {
+          "name": "data-and-tools-for-bibliographic-analysis",
+          "isOrdered": true,
+          "folders": {},
+          "files": {
+            "citnetexplorer": 0,
+            "citespace": 1,
+            "data-and-tools": 2,
+            "r-for-pubmed": 3,
+            "README": 4,
+            "reference-parsing": 5,
+            "sci2tool": 6,
+            "vosviewer": 7
+          }
+        }
+      },
+      "files": {
+        "bibliometrics": 0,
+        "bibliography-impact-factor-and-citations": 1,
+        "freecite": 2,
+        "problems-in-bibliometric-analysis": 3,
+        "research-articles": 4
+      }
     },
     "carcinogenesis-hallmarks-of-cancer": {
       "name": "carcinogenesis-hallmarks-of-cancer",

diff --git a/appendix/courses-and-moocs.md b/appendix/courses-and-moocs.md
@@ -3,12 +3,10 @@
 ## Courses and MOOCs
 
 * This list contains the MOOCs that I find useful.
-* edX  
-  [https://www.edx.org](https://www.edx.org)
-
-  Introduction to Biology - The Secret of Life  
-  [https://www.edx.org/course/introduction-biology-secret-life-mitx-7-00x-4](https://www.edx.org/course/introduction-biology-secret-life-mitx-7-00x-4)
-
+* edX
+[https://www.edx.org](https://www.edx.org)
+Introduction to Biology - The Secret of Life
+[https://www.edx.org/course/introduction-biology-secret-life-mitx-7-00x-4](https://www.edx.org/course/introduction-biology-secret-life-mitx-7-00x-4)
 * OsakaUx MED101x Introduction to Applied Biostatistics Statistics for Medical Research
 * Courses
 
@@ -106,21 +104,21 @@ r-statistics.co
 
 [http://r-statistics.co/](http://r-statistics.co/)
 
-Run bash from R  
+Run bash from R
 [http://rpubs.com/yihui/bash-knitr](http://rpubs.com/yihui/bash-knitr)
 
-knitr in a knutshella minimal tutorial  
+knitr in a knutshella minimal tutorial
 [http://kbroman.org/knitr\_knutshell/](http://kbroman.org/knitr_knutshell/)
 
-Use other languages in knitr  
+Use other languages in knitr
 [https://yihui.name/knitr/demo/engines/](https://yihui.name/knitr/demo/engines/)
 
 Run bash scripts
 
 [https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd](https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd)
 
-Creating Dynamic Documents with RMarkdown and Knitr  
-[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html\#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
+Creating Dynamic Documents with RMarkdown and Knitr
+[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
 
 [https://www.datacamp.com/community/blog/jupyter-notebook-r](https://www.datacamp.com/community/blog/jupyter-notebook-r)
 
@@ -160,7 +158,7 @@ Creating Dynamic Documents with RMarkdown and Knitr
 
 [https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17\_ncbi\_webinar\_new\_api\_keys.html](https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17_ncbi_webinar_new_api_keys.html)
 
-[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+\(R+bloggers\)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
+[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+(R+bloggers)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
 
 [https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/](https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/)
 
@@ -224,21 +222,21 @@ r-statistics.co
 
 [http://r-statistics.co/](http://r-statistics.co/)
 
-Run bash from R  
+Run bash from R
 [http://rpubs.com/yihui/bash-knitr](http://rpubs.com/yihui/bash-knitr)
 
-knitr in a knutshella minimal tutorial  
+knitr in a knutshella minimal tutorial
 [http://kbroman.org/knitr\_knutshell/](http://kbroman.org/knitr_knutshell/)
 
-Use other languages in knitr  
+Use other languages in knitr
 [https://yihui.name/knitr/demo/engines/](https://yihui.name/knitr/demo/engines/)
 
 Run bash scripts
 
 [https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd](https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd)
 
-Creating Dynamic Documents with RMarkdown and Knitr  
-[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html\#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
+Creating Dynamic Documents with RMarkdown and Knitr
+[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
 
 [https://www.datacamp.com/community/blog/jupyter-notebook-r](https://www.datacamp.com/community/blog/jupyter-notebook-r)
 
@@ -278,7 +276,7 @@ Creating Dynamic Documents with RMarkdown and Knitr
 
 [https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17\_ncbi\_webinar\_new\_api\_keys.html](https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17_ncbi_webinar_new_api_keys.html)
 
-[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+\(R+bloggers\)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
+[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+(R+bloggers)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
 
 [https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/](https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/)
 
@@ -340,21 +338,21 @@ r-statistics.co
 
 [http://r-statistics.co/](http://r-statistics.co/)
 
-Run bash from R  
+Run bash from R
 [http://rpubs.com/yihui/bash-knitr](http://rpubs.com/yihui/bash-knitr)
 
-knitr in a knutshella minimal tutorial  
+knitr in a knutshella minimal tutorial
 [http://kbroman.org/knitr\_knutshell/](http://kbroman.org/knitr_knutshell/)
 
-Use other languages in knitr  
+Use other languages in knitr
 [https://yihui.name/knitr/demo/engines/](https://yihui.name/knitr/demo/engines/)
 
 Run bash scripts
 
 [https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd](https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd)
 
-Creating Dynamic Documents with RMarkdown and Knitr  
-[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html\#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
+Creating Dynamic Documents with RMarkdown and Knitr
+[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
 
 [https://www.datacamp.com/community/blog/jupyter-notebook-r](https://www.datacamp.com/community/blog/jupyter-notebook-r)
 
@@ -394,7 +392,7 @@ Creating Dynamic Documents with RMarkdown and Knitr
 
 [https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17\_ncbi\_webinar\_new\_api\_keys.html](https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17_ncbi_webinar_new_api_keys.html)
 
-[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+\(R+bloggers\)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
+[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+(R+bloggers)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
 
 [https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/](https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/)
 
@@ -452,21 +450,21 @@ r-statistics.co
 
 [http://r-statistics.co/](http://r-statistics.co/)
 
-Run bash from R  
+Run bash from R
 [http://rpubs.com/yihui/bash-knitr](http://rpubs.com/yihui/bash-knitr)
 
-knitr in a knutshella minimal tutorial  
+knitr in a knutshella minimal tutorial
 [http://kbroman.org/knitr\_knutshell/](http://kbroman.org/knitr_knutshell/)
 
-Use other languages in knitr  
+Use other languages in knitr
 [https://yihui.name/knitr/demo/engines/](https://yihui.name/knitr/demo/engines/)
 
 Run bash scripts
 
 [https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd](https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd)
 
-Creating Dynamic Documents with RMarkdown and Knitr  
-[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html\#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
+Creating Dynamic Documents with RMarkdown and Knitr
+[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
 
 [https://www.datacamp.com/community/blog/jupyter-notebook-r](https://www.datacamp.com/community/blog/jupyter-notebook-r)
 
@@ -506,7 +504,7 @@ Creating Dynamic Documents with RMarkdown and Knitr
 
 [https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17\_ncbi\_webinar\_new\_api\_keys.html](https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17_ncbi_webinar_new_api_keys.html)
 
-[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+\(R+bloggers\)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
+[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+(R+bloggers)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
 
 [https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/](https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/)
 
@@ -564,21 +562,21 @@ r-statistics.co
 
 [http://r-statistics.co/](http://r-statistics.co/)
 
-Run bash from R  
+Run bash from R
 [http://rpubs.com/yihui/bash-knitr](http://rpubs.com/yihui/bash-knitr)
 
-knitr in a knutshella minimal tutorial  
+knitr in a knutshella minimal tutorial
 [http://kbroman.org/knitr\_knutshell/](http://kbroman.org/knitr_knutshell/)
 
-Use other languages in knitr  
+Use other languages in knitr
 [https://yihui.name/knitr/demo/engines/](https://yihui.name/knitr/demo/engines/)
 
 Run bash scripts
 
 [https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd](https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd)
 
-Creating Dynamic Documents with RMarkdown and Knitr  
-[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html\#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
+Creating Dynamic Documents with RMarkdown and Knitr
+[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
 
 [https://www.datacamp.com/community/blog/jupyter-notebook-r](https://www.datacamp.com/community/blog/jupyter-notebook-r)
 
@@ -618,7 +616,7 @@ Creating Dynamic Documents with RMarkdown and Knitr
 
 [https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17\_ncbi\_webinar\_new\_api\_keys.html](https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17_ncbi_webinar_new_api_keys.html)
 
-[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+\(R+bloggers\)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
+[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+(R+bloggers)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
 
 [https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/](https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/)
 
@@ -680,21 +678,21 @@ r-statistics.co
 
 [http://r-statistics.co/](http://r-statistics.co/)
 
-Run bash from R  
+Run bash from R
 [http://rpubs.com/yihui/bash-knitr](http://rpubs.com/yihui/bash-knitr)
 
-knitr in a knutshella minimal tutorial  
+knitr in a knutshella minimal tutorial
 [http://kbroman.org/knitr\_knutshell/](http://kbroman.org/knitr_knutshell/)
 
-Use other languages in knitr  
+Use other languages in knitr
 [https://yihui.name/knitr/demo/engines/](https://yihui.name/knitr/demo/engines/)
 
 Run bash scripts
 
 [https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd](https://github.com/yihui/knitr-examples/blob/master/027-engine-bash.Rmd)
 
-Creating Dynamic Documents with RMarkdown and Knitr  
-[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html\#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
+Creating Dynamic Documents with RMarkdown and Knitr
+[https://rstudio-pubs-static.s3.amazonaws.com/180546\_e2d5bf84795745ebb5cd3be3dab71fca.html#561\_inline\_r\_code](https://rstudio-pubs-static.s3.amazonaws.com/180546_e2d5bf84795745ebb5cd3be3dab71fca.html#561_inline_r_code)
 
 [https://www.datacamp.com/community/blog/jupyter-notebook-r](https://www.datacamp.com/community/blog/jupyter-notebook-r)
 
@@ -734,7 +732,7 @@ Creating Dynamic Documents with RMarkdown and Knitr
 
 [https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17\_ncbi\_webinar\_new\_api\_keys.html](https://www.nlm.nih.gov/pubs/techbull/nd17/brief/nd17_ncbi_webinar_new_api_keys.html)
 
-[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+\(R+bloggers\)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
+[https://www.r-bloggers.com/how-happy-is-your-country - happy-planet-index-visualized/?utm\_source=feedburner&utm\_medium=email&utm\_campaign=Feed%3A+RBloggers+(R+bloggers)](https://www.r-bloggers.com/how-happy-is-your-country%20-%20happy-planet-index-visualized/?utm_source=feedburner&utm_medium=email&utm_campaign=Feed%3A+RBloggers+%28R+bloggers%29)
 
 [https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/](https://www.ncbi.nlm.nih.gov/home/coursesandwebinars/)
 
@@ -784,5 +782,4 @@ R interface to Keras
 
 * [eR-BioStat](https://er-biostat.github.io/Courses/)
 
-[https://er-biostat.github.io/Courses/abouterbiostat1/](https://er-biostat.github.io/Courses/abouterbiostat1/)
-
+[https://er-biostat.github.io/Courses/abouterbiostat1/](https://er-biostat.github.io/Courses/abouterbiostat1/)
diff --git a/appendix/deneme.md b/appendix/deneme.md
diff --git a/appendix/deutsche-artikel.md b/appendix/deutsche-artikel.md
@@ -4,7 +4,4 @@
 
 {% embed url="https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231" %}
 
-[https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231](https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231)
-
-
-
+[https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231](https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231)
diff --git a/appendix/github-repositories.md b/appendix/github-repositories.md
@@ -38,7 +38,4 @@
 
 {% embed url="https://github.com/seeranalysis" %}
 
-{% embed url="https://github.com/statisticial-modelling-center" %}
-
-
-
+{% embed url="https://github.com/statisticial-modelling-center" %}
Original file line number	Diff line number	Diff line change
Expand Up		@@ -4,7 +4,4 @@

		{% embed url="https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231" %}

		[https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231](https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231)



		[https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231](https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -38,7 +38,4 @@

		{% embed url="https://github.com/seeranalysis" %}

		{% embed url="https://github.com/statisticial-modelling-center" %}



		{% embed url="https://github.com/statisticial-modelling-center" %}