Merge branch 'master' of https://github.com/sbalci/ParaPathology

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diff --git a/SUMMARY.md b/SUMMARY.md
@@ -5,9 +5,10 @@
 ## Introduction
 
 * [Introduction](introduction/introduction.md)
-* [GitBook Manual](https://docs.gitbook.com/)
-* [Patoloji Notlari](http://www.patolojinotlari.com/)
-* [Edit Here](https://app.gitbook.com/@serdarbalci/s/parapathology/)
+* [GitBook Manual](https://docs.gitbook.com)
+* [Patoloji Notlari](http://www.patolojinotlari.com)
+* [Edit Here](introduction/edit-here.md)
+* [Pathology Pages](introduction/pathology-pages.md)
 
 ## Medical School Lectures
 
@@ -184,7 +185,7 @@
 * [Laboratory Management](laboratory-management/laboratory-management.md)
 * [Lean](laboratory-management/lean.md)
 * [Laboratory Information Systems](laboratory-management/laboratory-information-systems/README.md)
-  * [Patoloji  Modülü Özellikleri](laboratory-management/laboratory-information-systems/patoloji-moduelue-oezellikleri.md)
+  * [Patoloji Modülü Özellikleri](laboratory-management/laboratory-information-systems/patoloji-moduelue-oezellikleri.md)
 * [Routine Histology Laboratory](laboratory-management/routine-histology-laboratory.md)
 * [Liquid Based Cytology Preperations](laboratory-management/liquid-based-cytology-preperations.md)
 * [Research Lab](laboratory-management/research-lab.md)
@@ -400,12 +401,11 @@
 * [Yazmayıp da beslese miydik](appendix/yazmayipdabeslesemiydik.md)
 * [Deutsche Artikel](appendix/deutsche-artikel.md)
 
-## Pathology and Social Media <a id="pathology-and-social-media-1"></a>
+## Pathology and Social Media <a href="pathology-and-social-media-1" id="pathology-and-social-media-1"></a>
 
 * [Pathology and Social Media](pathology-and-social-media-1/pathology-and-social-media.md)
 
-## Pathology Tweets <a id="pathology-tweets-1"></a>
+## Pathology Tweets <a href="pathology-tweets-1" id="pathology-tweets-1"></a>
 
 * [Pathology Tweets](pathology-tweets-1/pathology-tweets/README.md)
   * [Pathology Tweets](pathology-tweets-1/pathology-tweets/pathology-tweets.md)
-
diff --git a/appendix/books.md b/appendix/books.md
@@ -9,59 +9,56 @@
 
 [https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/](https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/)
 
-[![](../.gitbook/assets/ekran-resmi-2017-01-06-21-07-11%20%281%29%20%281%29.jpg)](https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/)
+[![](<../.gitbook/assets/ekran-resmi-2017-01-06-21-07-11 (1).jpg>)](https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/)
 
-* [![](https://www.derm101.com/wp-content/uploads/cover_pathology.jpg)](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
+*   [![](https://www.derm101.com/wp-content/uploads/cover\_pathology.jpg)](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
 
-  [A Philosophy of Practice of Surgical Pathology: Dermatopathology As Model](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
+    [A Philosophy of Practice of Surgical Pathology: Dermatopathology As Model](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
 
-  A. Bernard Ackerman, M.D.
-
-  To me, dermatopathology is a microcosm, and the concepts that obtain for effective and gratifying practice of it are equally valid in the world beyond the microscope, avers the author in his Foreword. This work is a synthesis of his 30 years of thought about the nature of the practice of surgical pathology. It was written for those concerned with that practice, from medical students to consultant pathologists, from general pathologists to special organ pathologists, from pure morphologists to molecular biologists. The volume endeavors to help students inquire into the essence of the practice of pathology and dermatopathology and, in the process, to forge a system for practice that is both reflective and effective. As a by-product, principles fundamental to practice of dermatopathology, and by extension to all pathology, are taught through precept and drawings of exceptional pedagogical worth.
+    A. Bernard Ackerman, M.D.
 
+    To me, dermatopathology is a microcosm, and the concepts that obtain for effective and gratifying practice of it are equally valid in the world beyond the microscope, avers the author in his Foreword. This work is a synthesis of his 30 years of thought about the nature of the practice of surgical pathology. It was written for those concerned with that practice, from medical students to consultant pathologists, from general pathologists to special organ pathologists, from pure morphologists to molecular biologists. The volume endeavors to help students inquire into the essence of the practice of pathology and dermatopathology and, in the process, to forge a system for practice that is both reflective and effective. As a by-product, principles fundamental to practice of dermatopathology, and by extension to all pathology, are taught through precept and drawings of exceptional pedagogical worth.
 * This list contains the books that I find useful.
 * Patoloji ve Laboratuvarını Anlama Klavuzu
 
 [https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/](https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/)
 
-[![](../.gitbook/assets/ekran-resmi-2017-01-06-21-07-11%20%281%29.jpg)](https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/)
-
-* [![](https://www.derm101.com/wp-content/uploads/cover_pathology.jpg)](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
+[![](<../.gitbook/assets/ekran-resmi-2017-01-06-21-07-11 (1) (1).jpg>)](https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/)
 
-  [A Philosophy of Practice of Surgical Pathology: Dermatopathology As Model](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
+*   [![](https://www.derm101.com/wp-content/uploads/cover\_pathology.jpg)](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
 
-  A. Bernard Ackerman, M.D.
+    [A Philosophy of Practice of Surgical Pathology: Dermatopathology As Model](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
 
-  To me, dermatopathology is a microcosm, and the concepts that obtain for effective and gratifying practice of it are equally valid in the world beyond the microscope, avers the author in his Foreword. This work is a synthesis of his 30 years of thought about the nature of the practice of surgical pathology. It was written for those concerned with that practice, from medical students to consultant pathologists, from general pathologists to special organ pathologists, from pure morphologists to molecular biologists. The volume endeavors to help students inquire into the essence of the practice of pathology and dermatopathology and, in the process, to forge a system for practice that is both reflective and effective. As a by-product, principles fundamental to practice of dermatopathology, and by extension to all pathology, are taught through precept and drawings of exceptional pedagogical worth.
+    A. Bernard Ackerman, M.D.
 
+    To me, dermatopathology is a microcosm, and the concepts that obtain for effective and gratifying practice of it are equally valid in the world beyond the microscope, avers the author in his Foreword. This work is a synthesis of his 30 years of thought about the nature of the practice of surgical pathology. It was written for those concerned with that practice, from medical students to consultant pathologists, from general pathologists to special organ pathologists, from pure morphologists to molecular biologists. The volume endeavors to help students inquire into the essence of the practice of pathology and dermatopathology and, in the process, to forge a system for practice that is both reflective and effective. As a by-product, principles fundamental to practice of dermatopathology, and by extension to all pathology, are taught through precept and drawings of exceptional pedagogical worth.
 * This list contains the books that I find useful.
 * Patoloji ve Laboratuvarını Anlama Klavuzu
 
 [https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/](https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/)
 
-[![](../.gitbook/assets/ekran-resmi-2017-01-06-21-07-11%20%281%29%20%282%29.jpg)](https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/)
+[![](<../.gitbook/assets/ekran-resmi-2017-01-06-21-07-11 (1) (2).jpg>)](https://alpusubutun.wordpress.com/2017/01/07/patoloji-ve-laboratuvarlarini-anlama-klavuzu/)
 
-* [![](https://www.derm101.com/wp-content/uploads/cover_pathology.jpg)](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
+*   [![](https://www.derm101.com/wp-content/uploads/cover\_pathology.jpg)](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
 
-  [A Philosophy of Practice of Surgical Pathology: Dermatopathology As Model](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
+    [A Philosophy of Practice of Surgical Pathology: Dermatopathology As Model](https://www.derm101.com/products/a-philosophy-of-practice-of-surgical-pathology-dermatopathology-as-model/)
 
-  A. Bernard Ackerman, M.D.
-
-  To me, dermatopathology is a microcosm, and the concepts that obtain for effective and gratifying practice of it are equally valid in the world beyond the microscope, avers the author in his Foreword. This work is a synthesis of his 30 years of thought about the nature of the practice of surgical pathology. It was written for those concerned with that practice, from medical students to consultant pathologists, from general pathologists to special organ pathologists, from pure morphologists to molecular biologists. The volume endeavors to help students inquire into the essence of the practice of pathology and dermatopathology and, in the process, to forge a system for practice that is both reflective and effective. As a by-product, principles fundamental to practice of dermatopathology, and by extension to all pathology, are taught through precept and drawings of exceptional pedagogical worth.
+    A. Bernard Ackerman, M.D.
 
+    To me, dermatopathology is a microcosm, and the concepts that obtain for effective and gratifying practice of it are equally valid in the world beyond the microscope, avers the author in his Foreword. This work is a synthesis of his 30 years of thought about the nature of the practice of surgical pathology. It was written for those concerned with that practice, from medical students to consultant pathologists, from general pathologists to special organ pathologists, from pure morphologists to molecular biologists. The volume endeavors to help students inquire into the essence of the practice of pathology and dermatopathology and, in the process, to forge a system for practice that is both reflective and effective. As a by-product, principles fundamental to practice of dermatopathology, and by extension to all pathology, are taught through precept and drawings of exceptional pedagogical worth.
 * Histology Hacks
 
-[https://www.amazon.com/dp/1979731772/ref=cm\_sw\_r\_cp\_api\_Tn-sAbM17Q6KS](https://www.amazon.com/dp/1979731772/ref=cm_sw_r_cp_api_Tn-sAbM17Q6KS)
+[https://www.amazon.com/dp/1979731772/ref=cm\_sw\_r\_cp\_api\_Tn-sAbM17Q6KS](https://www.amazon.com/dp/1979731772/ref=cm\_sw\_r\_cp\_api\_Tn-sAbM17Q6KS)
 
-[https://www.amazon.com/dp/1979731772/ref=cm\_sw\_r\_cp\_api\_Tn-sAbM17Q6KS](https://www.amazon.com/dp/1979731772/ref=cm_sw_r_cp_api_Tn-sAbM17Q6KS)
+[https://www.amazon.com/dp/1979731772/ref=cm\_sw\_r\_cp\_api\_Tn-sAbM17Q6KS](https://www.amazon.com/dp/1979731772/ref=cm\_sw\_r\_cp\_api\_Tn-sAbM17Q6KS)
 
 * Books
 
 [http://genomicsclass.github.io/book/](http://genomicsclass.github.io/book/)
 
-[http://r4ds.had.co.nz/](http://r4ds.had.co.nz/)
+[http://r4ds.had.co.nz/](http://r4ds.had.co.nz)
 
-[http://bioinformaticsalgorithms.com/](http://bioinformaticsalgorithms.com/)
+[http://bioinformaticsalgorithms.com/](http://bioinformaticsalgorithms.com)
 
 * [https://tinyletter.com/data-is-plural/archive](https://tinyletter.com/data-is-plural/archive)
 
@@ -72,4 +69,3 @@
 [https://github.com/rOpenHealth/rpubmed](https://github.com/rOpenHealth/rpubmed)
 
 [https://renkun-ken.github.io/rlist-tutorial/index.html](https://renkun-ken.github.io/rlist-tutorial/index.html)
-
diff --git a/appendix/videos.md b/appendix/videos.md
@@ -1,66 +1,65 @@
 # Videos
 
-## [USCAP 2014 Platform Presentation Mismatch Repair Protein Expression in Ampullary Adenocarcinomas](https://www.youtube.com/watch?v=1jyiiG7vLn8&t=203s)
+## [USCAP 2014 Platform Presentation Mismatch Repair Protein Expression in Ampullary Adenocarcinomas](https://www.youtube.com/watch?v=1jyiiG7vLn8\&t=203s)
 
-{% embed url="https://www.youtube.com/watch?v=1jyiiG7vLn8&t=203s" caption="" %}
+{% embed url="https://www.youtube.com/watch?v=1jyiiG7vLn8&t=203s" %}
 
 ## [SERDAR BALCI YouTube Channel](https://www.youtube.com/user/serdarbalcitube/)
 
-{% embed url="https://www.youtube.com/user/serdarbalcitube/playlists?view\_as=subscriber" caption="" %}
+{% embed url="https://www.youtube.com/user/serdarbalcitube/playlists?view_as=subscriber" %}
 
 ## [Videos on Nature](https://www.youtube.com/playlist?list=PLxRBOaoEoP4Ih7Qlv-W5oWH4162-Ganc3)
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4Ih7Qlv-W5oWH4162-Ganc3" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4Ih7Qlv-W5oWH4162-Ganc3" %}
 
 ## [Videos on Pathology](https://www.youtube.com/playlist?list=PLxRBOaoEoP4IottJNZLL78vtLEy2au3w5)
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4IottJNZLL78vtLEy2au3w5" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4IottJNZLL78vtLEy2au3w5" %}
 
 #### Videos on Academy
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4IDSWr262SUYMgeU9P5H\_u2" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4IDSWr262SUYMgeU9P5H_u2" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4Im-vHUUYcYWw6h3nT-9RTw" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4Im-vHUUYcYWw6h3nT-9RTw" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4JayZE9kOG9dv4y\_5gqgM5O" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4JayZE9kOG9dv4y_5gqgM5O" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KUSgmcNjSGBFu7PYipGVrX" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KUSgmcNjSGBFu7PYipGVrX" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LwLu\_FEc6sTZ-AqZtoFzFy" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LwLu_FEc6sTZ-AqZtoFzFy" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4JmPenBZ5QdBoPFcdj7or7l" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4JmPenBZ5QdBoPFcdj7or7l" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4J9kFDFZOIlRhxOH\_sOmBJK" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4J9kFDFZOIlRhxOH_sOmBJK" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4IaTPo2JCFIa9CjTUQ7c01j" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4IaTPo2JCFIa9CjTUQ7c01j" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LcIGrzl9HtQM\_McJ3Z\_Xou" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LcIGrzl9HtQM_McJ3Z_Xou" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KewghMtFX3RJNfJIev-QpI" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KewghMtFX3RJNfJIev-QpI" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4JjkywKrK-ewvYI2yTK1JRI" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4JjkywKrK-ewvYI2yTK1JRI" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4IimCG1Sg2uQl0NEIiU7xMi" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4IimCG1Sg2uQl0NEIiU7xMi" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KxY4f64zTJGDlo80HBF9Jl" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KxY4f64zTJGDlo80HBF9Jl" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KcnlTbKbqwgJGJyIEGZyG-" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KcnlTbKbqwgJGJyIEGZyG-" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4Lal1bwByoeaSvwP3cxtY-P" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4Lal1bwByoeaSvwP3cxtY-P" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KZPCJuzXAvTzQ3Ce83aU5g" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4KZPCJuzXAvTzQ3Ce83aU5g" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LhYsNVspvBhKXIxGf23aRz" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LhYsNVspvBhKXIxGf23aRz" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LW4OqVc36n4LO5F-kx0Ba5" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LW4OqVc36n4LO5F-kx0Ba5" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4L4LKwcmEgcB8VYSD0CkdxJ" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4L4LKwcmEgcB8VYSD0CkdxJ" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4JhDnagz7DaMcdAgd9B0S8-" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4JhDnagz7DaMcdAgd9B0S8-" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4Ijxzp4aEIAr\_0pRbBmY-aO" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4Ijxzp4aEIAr_0pRbBmY-aO" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4J80qxqqO5bOKBa1r91ycKN" caption="" %}
-
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LhKyIX2uxuivM4ePTUUPrq" caption="" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4J80qxqqO5bOKBa1r91ycKN" %}
 
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LhKyIX2uxuivM4ePTUUPrq" %}