CI added changes 2023-05-01 11:37:45

sbalci · May 1, 2023 · 22e8b99 · 22e8b99
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -0,0 +1,2 @@
+^renv$
+^renv\.lock$
diff --git a/.Rprofile b/.Rprofile
@@ -0,0 +1 @@
+source("renv/activate.R")
diff --git a/.github/R-version b/.github/R-version
@@ -0,0 +1 @@
+R-4.3
diff --git a/.github/depends.Rds b/.github/depends.Rds
diff --git a/appendix/courses-and-moocs.md b/appendix/courses-and-moocs.md
@@ -782,4 +782,4 @@ R interface to Keras
 
 * [eR-BioStat](https://er-biostat.github.io/Courses/)
 
-[https://er-biostat.github.io/Courses/abouterbiostat1/](https://er-biostat.github.io/Courses/abouterbiostat1/)
+[https://er-biostat.github.io/Courses/abouterbiostat1/](https://er-biostat.github.io/Courses/abouterbiostat1/)
diff --git a/appendix/deutsche-artikel.md b/appendix/deutsche-artikel.md
@@ -4,4 +4,4 @@
 
 {% embed url="https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231" %}
 
-[https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231](https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231)
+[https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231](https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231)
diff --git a/appendix/github-repositories.md b/appendix/github-repositories.md
@@ -38,4 +38,4 @@
 
 {% embed url="https://github.com/seeranalysis" %}
 
-{% embed url="https://github.com/statisticial-modelling-center" %}
+{% embed url="https://github.com/statisticial-modelling-center" %}
diff --git a/appendix/videos.md b/appendix/videos.md
@@ -62,4 +62,4 @@
 
 {% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4J80qxqqO5bOKBa1r91ycKN" %}
 
-{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LhKyIX2uxuivM4ePTUUPrq" %}
+{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LhKyIX2uxuivM4ePTUUPrq" %}
diff --git a/appendix/web-pages.md b/appendix/web-pages.md
@@ -382,4 +382,4 @@ www.cap.org/web/submenu/calendar/webinars
 
 www.rstudio.com/resources/webinars/
 
-[https://www.youtube.com/watch?v=6NFyB19D\_fU&feature=youtu.be&t=7m37s](https://www.youtube.com/watch?v=6NFyB19D_fU&feature=youtu.be&t=7m37s)
+[https://www.youtube.com/watch?v=6NFyB19D\_fU&feature=youtu.be&t=7m37s](https://www.youtube.com/watch?v=6NFyB19D_fU&feature=youtu.be&t=7m37s)
diff --git a/autopsy/autopsy.md b/autopsy/autopsy.md
@@ -20,4 +20,4 @@
 
 ## Can low autopsy rates be increased? Yes, we can! Should postmortem examinations in oncology be performed? Yes, we should! A postmortem analysis of oncological cases
 
-{% embed url="https://pubmed.ncbi.nlm.nih.gov/32651729/" %}
+{% embed url="https://pubmed.ncbi.nlm.nih.gov/32651729/" %}
diff --git a/bibliometrics/data-and-tools-for-bibliographic-analysis/citnetexplorer.md b/bibliometrics/data-and-tools-for-bibliographic-analysis/citnetexplorer.md
@@ -4,4 +4,4 @@
 
 [http://www.citnetexplorer.nl/](http://www.citnetexplorer.nl/)
 
-{% embed url="https://www.slideshare.net/NeesJanvanEck/getting-started-32116907" %}
+{% embed url="https://www.slideshare.net/NeesJanvanEck/getting-started-32116907" %}
diff --git a/bibliometrics/data-and-tools-for-bibliographic-analysis/data-and-tools.md b/bibliometrics/data-and-tools-for-bibliographic-analysis/data-and-tools.md
@@ -570,4 +570,4 @@ Bluesky Statistics
 
 * Join your data with Gapminder's data
 
-[https://vizabi.org/tutorials/2017/04/04/join-your-data-with-g/](https://vizabi.org/tutorials/2017/04/04/join-your-data-with-g/)
+[https://vizabi.org/tutorials/2017/04/04/join-your-data-with-g/](https://vizabi.org/tutorials/2017/04/04/join-your-data-with-g/)
diff --git a/bibliometrics/data-and-tools-for-bibliographic-analysis/r-for-pubmed.md b/bibliometrics/data-and-tools-for-bibliographic-analysis/r-for-pubmed.md
@@ -138,4 +138,4 @@ Provides an R interface to the NCBI's 'EUtils' API, allowing users to search dat
 
 ## [reutils: Talk to the NCBI EUtils](https://cran.r-project.org/web/packages/reutils/index.html)
 
-An interface to NCBI databases such as PubMed, GenBank, or GEO powered by the Entrez Programming Utilities (EUtils). The nine EUtils provide programmatic access to the NCBI Entrez query and database system for searching and retrieving biological data.
+An interface to NCBI databases such as PubMed, GenBank, or GEO powered by the Entrez Programming Utilities (EUtils). The nine EUtils provide programmatic access to the NCBI Entrez query and database system for searching and retrieving biological data.
diff --git a/laboratory-management/laboratory-management.md b/laboratory-management/laboratory-management.md
@@ -8,7 +8,8 @@
 
 
 
-**Hasta ve Klinik İnisiyatifi ile patolojik incelemeye gönderilmeyebilecek doku-materyaller**
+
+**Hasta ve Klinik İnisiyatifi ile patolojik incelemeye gönderilmeyebilecek doku-materyaller**
 
 * Kozmetik nedenlerle çıkarılmış normal dokular (blefaroplasti, nazoplasti gibi)
 * Yara debridman materyali
Original file line number	Diff line number	Diff line change
Expand Up		@@ -782,4 +782,4 @@ R interface to Keras

		* [eR-BioStat](https://er-biostat.github.io/Courses/)

		[https://er-biostat.github.io/Courses/abouterbiostat1/](https://er-biostat.github.io/Courses/abouterbiostat1/)
		[https://er-biostat.github.io/Courses/abouterbiostat1/](https://er-biostat.github.io/Courses/abouterbiostat1/)
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Expand Up		@@ -4,4 +4,4 @@

		{% embed url="https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231" %}

		[https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231](https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231)
		[https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231](https://www.ncbi.nlm.nih.gov/pubmed/?term=31705231)
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Expand Up		@@ -38,4 +38,4 @@

		{% embed url="https://github.com/seeranalysis" %}

		{% embed url="https://github.com/statisticial-modelling-center" %}
		{% embed url="https://github.com/statisticial-modelling-center" %}
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Expand Up		@@ -62,4 +62,4 @@

		{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4J80qxqqO5bOKBa1r91ycKN" %}

		{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LhKyIX2uxuivM4ePTUUPrq" %}
		{% embed url="https://www.youtube.com/playlist?list=PLxRBOaoEoP4LhKyIX2uxuivM4ePTUUPrq" %}
Original file line number	Diff line number	Diff line change
Expand Up		@@ -382,4 +382,4 @@ www.cap.org/web/submenu/calendar/webinars

		www.rstudio.com/resources/webinars/

		[https://www.youtube.com/watch?v=6NFyB19D\_fU&feature=youtu.be&t=7m37s](https://www.youtube.com/watch?v=6NFyB19D_fU&feature=youtu.be&t=7m37s)
		[https://www.youtube.com/watch?v=6NFyB19D\_fU&feature=youtu.be&t=7m37s](https://www.youtube.com/watch?v=6NFyB19D_fU&feature=youtu.be&t=7m37s)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -20,4 +20,4 @@

		## Can low autopsy rates be increased? Yes, we can! Should postmortem examinations in oncology be performed? Yes, we should! A postmortem analysis of oncological cases

		{% embed url="https://pubmed.ncbi.nlm.nih.gov/32651729/" %}
		{% embed url="https://pubmed.ncbi.nlm.nih.gov/32651729/" %}
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Expand Up		@@ -4,4 +4,4 @@

		[http://www.citnetexplorer.nl/](http://www.citnetexplorer.nl/)

		{% embed url="https://www.slideshare.net/NeesJanvanEck/getting-started-32116907" %}
		{% embed url="https://www.slideshare.net/NeesJanvanEck/getting-started-32116907" %}
Original file line number	Diff line number	Diff line change
Expand Up		@@ -570,4 +570,4 @@ Bluesky Statistics

		* Join your data with Gapminder's data

		[https://vizabi.org/tutorials/2017/04/04/join-your-data-with-g/](https://vizabi.org/tutorials/2017/04/04/join-your-data-with-g/)
		[https://vizabi.org/tutorials/2017/04/04/join-your-data-with-g/](https://vizabi.org/tutorials/2017/04/04/join-your-data-with-g/)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -138,4 +138,4 @@ Provides an R interface to the NCBI's 'EUtils' API, allowing users to search dat

		## [reutils: Talk to the NCBI EUtils](https://cran.r-project.org/web/packages/reutils/index.html)

		An interface to NCBI databases such as PubMed, GenBank, or GEO powered by the Entrez Programming Utilities (EUtils). The nine EUtils provide programmatic access to the NCBI Entrez query and database system for searching and retrieving biological data.
		An interface to NCBI databases such as PubMed, GenBank, or GEO powered by the Entrez Programming Utilities (EUtils). The nine EUtils provide programmatic access to the NCBI Entrez query and database system for searching and retrieving biological data.