update

ClinicoPathLinuxDescriptives.Rproj

@@ -17,4 +17,5 @@ StripTrailingWhitespace: Yes
 
 BuildType: Package
 PackageUseDevtools: Yes
+PackageCleanBeforeInstall: Yes
 PackageInstallArgs: --no-multiarch --with-keep.source

DESCRIPTION

@@ -1,8 +1,8 @@
 Type: Package
 Package: ClinicoPathDescriptives
 Title: Descriptives Functions for Clinicopathological Research
-Version: 0.0.2.0084
-Date: 2021-02-14
+Version: 0.0.2.04
+Date: 2021-04-03
 Authors@R: 
     person(given = "Serdar",
            family = "Balci",
@@ -48,4 +48,4 @@ Remotes:
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.1.1
+RoxygenNote: 7.1.2

R/00jmv.R

@@ -423,4 +423,12 @@
         `year`=2020, 
         `title`=" Venn Diagram by ggplot2, with really easy-to-use API", 
         `publisher`="[R package]. Retrieved from https://github.com/yanlinlin82/ggvenn", 
-        `url`="https://github.com/yanlinlin82/ggvenn"))
+        `url`="https://github.com/yanlinlin82/ggvenn"), 
+    `ClinicoPathJamoviModule`=list(
+        `type`="software", 
+        `author`="Serdar Balci", 
+        `year`=2022, 
+        `title`="ClinicoPath jamovi Module doi:10.5281/zenodo.3997188", 
+        `publisher`="[R package]. Retrieved from https://github.com/sbalci/ClinicoPathJamoviModule", 
+        `doi`="10.17605/OSF.IO/9SZUD", 
+        `url`="https://www.serdarbalci.com/ClinicoPathJamoviModule/"))

R/agepyramid.h.R

@@ -62,7 +62,9 @@ agepyramidResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
             super$initialize(
                 options=options,
                 name="",
-                title="Age Pyramid")
+                title="Age Pyramid",
+                refs=list(
+                    "ClinicoPathJamoviModule"))
             self$add(jmvcore::Table$new(
                 options=options,
                 name="pyramidTable",

R/benford.h.R

@@ -46,7 +46,8 @@ benfordResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
                 name="",
                 title="Benford Analysis",
                 refs=list(
-                    "benford.analysis"))
+                    "benford.analysis",
+                    "ClinicoPathJamoviModule"))
             self$add(jmvcore::Html$new(
                 options=options,
                 name="todo",

R/crosstable.h.R

@@ -98,7 +98,9 @@ crosstableResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
             super$initialize(
                 options=options,
                 name="",
-                title="`Cross Table - ${group}`")
+                title="`Cross Table - ${group}`",
+                refs=list(
+                    "ClinicoPathJamoviModule"))
             self$add(jmvcore::Html$new(
                 options=options,
                 name="todo",

R/reportcat.h.R

@@ -44,7 +44,9 @@ reportcatResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
                 options=options,
                 name="",
                 title="Summary of Categorical Variables",
-                refs="report")
+                refs=list(
+                    "report",
+                    "ClinicoPathJamoviModule"))
             self$add(jmvcore::Html$new(
                 options=options,
                 name="todo",

R/summarydata.h.R

@@ -42,7 +42,9 @@ summarydataResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class
             super$initialize(
                 options=options,
                 name="",
-                title="Summary of Continuous Variables")
+                title="Summary of Continuous Variables",
+                refs=list(
+                    "ClinicoPathJamoviModule"))
             self$add(jmvcore::Html$new(
                 options=options,
                 name="todo",

R/tableone.h.R

@@ -62,7 +62,9 @@ tableoneResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
             super$initialize(
                 options=options,
                 name="",
-                title="Table One")
+                title="Table One",
+                refs=list(
+                    "ClinicoPathJamoviModule"))
             self$add(jmvcore::Html$new(
                 options=options,
                 name="todo",

R/venn.h.R

@@ -113,7 +113,8 @@ vennResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
                 name="",
                 title="Venn Diagram",
                 refs=list(
-                    "venn"),
+                    "venn",
+                    "ClinicoPathJamoviModule"),
                 clearWith=list(
                     "var1",
                     "var2",

jamovi/0000.yaml

@@ -1,12 +1,12 @@
 ---
 title: Descriptives Functions for Clinicopathological Research
 name: ClinicoPathLinuxDescriptives
-version: 0.0.2.0084
+version: 0.0.2.4
 jms: '1.0'
 authors:
   - Serdar Balci
 maintainer: Serdar Balci <[email protected]>
-date: '2021-04-14'
+date: '2022-04-03'
 type: R
 description: >-
   Descriptives Functions for Clinicopathological Research Descriptive functions

jamovi/00refs.yaml

@@ -511,6 +511,14 @@ refs:
         url: https://github.com/yanlinlin82/ggvenn
 
 
+    ClinicoPathJamoviModule:
+        type: 'software'
+        author: Serdar Balci
+        year: 2022
+        title: "ClinicoPath jamovi Module doi:10.5281/zenodo.3997188"
+        publisher: '[R package]. Retrieved from https://github.com/sbalci/ClinicoPathJamoviModule'
+        doi: 10.17605/OSF.IO/9SZUD
+        url: https://www.serdarbalci.com/ClinicoPathJamoviModule/
 
 
 

jamovi/agepyramid.r.yaml

@@ -41,4 +41,8 @@ items:
           - female
 
 
+refs:
+    - ClinicoPathJamoviModule
+
+
 ...

jamovi/benford.r.yaml

@@ -29,4 +29,6 @@ items:
 
 refs:
     - benford.analysis
+    - ClinicoPathJamoviModule
+
 ...

jamovi/crosstable.r.yaml

@@ -62,4 +62,9 @@ items:
       visible: (sty:nejm || sty:lancet || sty:hmisc)
       refs: tangram
 
+
+refs:
+    - ClinicoPathJamoviModule
+
+
 ...

jamovi/reportcat.r.yaml

@@ -15,6 +15,8 @@ items:
       title: ''
       type:  Preformatted
 
-refs: report
+refs:
+    - report
+    - ClinicoPathJamoviModule
 
 ...

jamovi/summarydata.r.yaml

@@ -14,6 +14,7 @@ items:
       type:  Preformatted
 
 
-# refs:
+refs:
+    - ClinicoPathJamoviModule
 
 ...

jamovi/tableone.r.yaml

@@ -47,4 +47,8 @@ items:
       visible: (sty:t4)
       refs: janitor
 
+refs:
+    - ClinicoPathJamoviModule
+
+
 ...

jamovi/venn.r.yaml

@@ -33,5 +33,6 @@ items:
 
 refs:
     - venn
+    - ClinicoPathJamoviModule
 
 ...