base recommit

sbalci · May 22, 2020 · c864aae · c864aae
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Type: Package
 Package: ClinicoPath
 Title: Analysis for Clinicopathological Research
-Version: 0.0.2.0004
-Date: 2020-05-19
+Version: 0.0.2.0005
+Date: 2020-05-20
 Authors@R: 
     person(given = "Serdar",
            family = "Balci",
@@ -17,6 +17,7 @@ Description: Analysis for Clinicopathological Research
     language summaries.
 License: GPL-3
 URL: https://github.com/sbalci/ClinicoPathJamoviModule/,
+    https://github.com/sbalci/ClinicoPath/,
     https://sbalci.github.io/ClinicoPathJamoviModule/
 BugReports: 
     https://github.com/sbalci/ClinicoPathJamoviModule/issues/
@@ -51,8 +52,7 @@ Imports:
     plotROC,
     arsenal,
     easyalluvial,
-    parcats,
-    htmlwidgets
+    parcats
 Remotes:
     ddsjoberg/gtsummary,
     ndphillips/FFTrees,

diff --git a/NAMESPACE b/NAMESPACE
@@ -1,6 +1,7 @@
 # Generated by roxygen2: do not edit by hand
 
 export(agreement)
+export(alluvial)
 export(competingsurvival)
 export(correlation)
 export(crosstable)

diff --git a/NEWS.md b/NEWS.md
@@ -54,6 +54,14 @@ uses #tangram package
 https://twitter.com/serdarbalci/status/1262691784574017536
 
 
+- You can make different plots based on variable type via #jamovi #ClinicoPath module. Using #rstats @jamovistats #ggstatsplot #ggalluvial #easyalluvial packages #pathology #pathologists #datavisualisation
+
+https://www.youtube.com/watch?v=m3uInetiC8w
+
+https://twitter.com/serdarbalci/status/1263191858454413312
+
+
+
 
 
 # ClinicoPath 0.0.1.0001

diff --git a/R/00jmv.R b/R/00jmv.R
@@ -290,4 +290,11 @@
         `year`=2019, 
         `title`="parcats: Interactive Parallel Categories Diagrams for 'easyalluvial'", 
         `publisher`="[R package]. Retrieved from https://CRAN.R-project.org/package=parcats", 
-        `url`="https://CRAN.R-project.org/package=parcats"))
+        `url`="https://CRAN.R-project.org/package=parcats"), 
+    `plotROC`=list(
+        `type`="software", 
+        `author`="Michael C. Sachs", 
+        `year`=2017, 
+        `title`="plotROC: A Tool for Plotting ROC Curves.Journal of Statistical Software, Code Snippets, 79(2), 1-19. doi:10.18637/jss.v079.c02", 
+        `publisher`="[R package]. Retrieved from https://CRAN.R-project.org/package=plotROC", 
+        `url`="https://CRAN.R-project.org/package=plotROC"))
diff --git a/R/crosstable.b.R b/R/crosstable.b.R
@@ -24,7 +24,9 @@ crosstableClass <- if (requireNamespace('jmvcore')) R6::R6Class(
                 todo <- "
                 <br>Welcome to ClinicoPath
                           <br><br>
-                          This tool will help you form a Cross Table
+                          This tool will help you form a Cross Table.
+                          <br><br>
+                          The functions select hypothesis tests automatically. You may see different results with different tables. Please verify your data distribution and appropriateness of the test accordingly. You may find <b>Statkat module</b> useful.
                           Please cite the packages and jamovi using references below.
                           "