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JG.3+S:A83S(26 seqs, 5 countries) #983

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xz-keg opened this issue Oct 18, 2023 · 4 comments
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JG.3+S:A83S(26 seqs, 5 countries) #983

xz-keg opened this issue Oct 18, 2023 · 4 comments
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2nuc mutation designated FLip = S:L455F / S:F456L S:52 S:83 S:704
Milestone
JG.3.3

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@xz-keg
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xz-keg commented Oct 18, 2023

I find a 2-nuc mutation: G21809T and T21810C makes S:83V->A->S
JG.3+G21809T(S:A83S)

GISAID query: G21809T,G22927T,C1889T
No. of seqs: 9(Croatia 3 Netherlands 2 Belgium 2 Spain 1 Sweden 1)

GISAID query finds 8, while EPI_ISL_18397090 shares other mutations with other Croatian seqs but have 21809 site masked.

First: EPI_ISL_18397084, Croatia, 2023-8-29
Latest: EPI_ISL_18371015, Belgium, 2023-10-1

usher

image
@xz-keg xz-keg changed the title JG.3+S:A83S(9 seqs, 5 countries) JG.3+S:A83S(10 seqs, 5 countries) Oct 23, 2023
@xz-keg xz-keg changed the title JG.3+S:A83S(10 seqs, 5 countries) JG.3+S:A83S(16 seqs, 5 countries) Oct 28, 2023
@xz-keg xz-keg changed the title JG.3+S:A83S(16 seqs, 5 countries) JG.3+S:A83S(18 seqs, 5 countries) Nov 1, 2023
@FedeGueli FedeGueli added the To be proposed Green light for proposal label Nov 2, 2023
@FedeGueli
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Please propose once it reaches 25

@NkRMnZr NkRMnZr mentioned this issue Nov 3, 2023
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@FedeGueli FedeGueli changed the title JG.3+S:A83S(18 seqs, 5 countries) JG.3+S:A83S(22 seqs, 5 countries) Nov 3, 2023
@FedeGueli
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22 now last ones from Belgium

@xz-keg xz-keg changed the title JG.3+S:A83S(22 seqs, 5 countries) JG.3+S:A83S(23 seqs, 5 countries) Nov 3, 2023
@xz-keg xz-keg changed the title JG.3+S:A83S(23 seqs, 5 countries) JG.3+S:A83S(24 seqs, 5 countries) Nov 5, 2023
@xz-keg xz-keg changed the title JG.3+S:A83S(24 seqs, 5 countries) JG.3+S:A83S(26 seqs, 5 countries) Nov 7, 2023
@xz-keg xz-keg mentioned this issue Nov 7, 2023
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@xz-keg xz-keg closed this as completed Nov 7, 2023
@FedeGueli
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Thank you

@FedeGueli FedeGueli added this to the JG.3.3 milestone Nov 17, 2023
@FedeGueli FedeGueli added designated and removed To be proposed Green light for proposal labels Nov 17, 2023
@FedeGueli
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Designated JG.3.3 via cov-lineages/pango-designation@6ebf3a4

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2nuc mutation designated FLip = S:L455F / S:F456L S:52 S:83 S:704
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