Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

EG.5.1.3/GK.2.1 recombinant (Flip+511+Orf9b:5T) ( 6 seqs, Belgium/Spain) #947

Closed
xz-keg opened this issue Oct 13, 2023 · 3 comments
Closed

EG.5.1.3/GK.2.1 recombinant (Flip+511+Orf9b:5T) ( 6 seqs, Belgium/Spain) #947

xz-keg opened this issue Oct 13, 2023 · 3 comments
Labels
Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. FLip = S:L455F / S:F456L recombinant S:511

Comments

@xz-keg
Copy link
Contributor

xz-keg commented Oct 13, 2023 •
edited
Loading

XBB.1.5(with 17124 but without 10204)+

del686_694,C1889T, C2334T, C3589T, C5140T, G5720A, C7564T, T8737C, T8885C, T11187C,G12467T, C15755G, T22928C,G22927T,C22624T,G23093A,C23741T,A25045G,A27507C,A28032G,T28297C, C29625T,

Orf1a: del141_143, R542C,A690V,G1819S,L3641S,A4068V
Orf1b:S763C
S:L455F,F456L,V511I
Orf8:I47V
Orf9b:I5T
Orf10:S23F

C1889T, C2334T, G5720A,A27507C,T28297C, C29625T from EG.5.1.3
C7564T, T8737C, T11187C,G12467T, C15755G, T22928C,G22927T,C22624T,G23093A,C23741T,A25045G from GK.2.1

del686_694, C5140T,A28032G from European EG.5.1.3 branch
C3589T,T8885C are private.

EG.5.1.3--GK.2.1--EG.5.1.3
Breakpoint 1 between 5721 and 7563
Breakpoint 2 between 25046 and 27058

GISAID query: C1889T,T8885C(edited)
No of seqs: 4(Belgium 3 Spain 1)

First: EPI_ISL_18332325, Spain, 2023-9-20
Latest:EPI_ISL_18377400, Belgium, 2023-10-2

usher

image
@xz-keg xz-keg mentioned this issue Oct 13, 2023
Closed
@xz-keg xz-keg mentioned this issue Oct 18, 2023
Closed
@corneliusroemer corneliusroemer changed the title EG.5.1.3/GK.2.1 recombinant (Flip+511+Orf9b:5T) ( 4 seqs, 2 countries) EG.5.1.3/GK.2.1 recombinant (Flip+511+Orf9b:5T) ( 4 seqs, Belgium/Spain) Oct 18, 2023
@xz-keg
Copy link
Contributor Author

xz-keg commented Oct 31, 2023

One more appears and it does not have C829T.

@xz-keg xz-keg changed the title EG.5.1.3/GK.2.1 recombinant (Flip+511+Orf9b:5T) ( 4 seqs, Belgium/Spain) EG.5.1.3/GK.2.1 recombinant (Flip+511+Orf9b:5T) ( 5 seqs, Belgium/Spain) Oct 31, 2023
@FedeGueli
Copy link

Thanks for the updated query

@FedeGueli FedeGueli added Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. and removed Rapid review needed labels Nov 13, 2023
@FedeGueli
Copy link

It seems dying off. lets wait a bit more before closing it

@xz-keg xz-keg closed this as not planned Won't fix, can't repro, duplicate, stale Nov 18, 2023
@xz-keg xz-keg changed the title EG.5.1.3/GK.2.1 recombinant (Flip+511+Orf9b:5T) ( 5 seqs, Belgium/Spain) EG.5.1.3/GK.2.1 recombinant (Flip+511+Orf9b:5T) ( 6 seqs, Belgium/Spain) Nov 29, 2023
@xz-keg xz-keg reopened this Nov 29, 2023
@xz-keg xz-keg closed this as not planned Won't fix, can't repro, duplicate, stale Nov 29, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. FLip = S:L455F / S:F456L recombinant S:511
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@xz-keg @FedeGueli