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HN.1 + ORF1a:I1367V and S:E554D (77) represents 2.1% of cases in Sweden #825

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Fearuncle opened this issue Sep 17, 2023 · 4 comments
Closed

HN.1 + ORF1a:I1367V and S:E554D (77) represents 2.1% of cases in Sweden #825

Fearuncle opened this issue Sep 17, 2023 · 4 comments
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Rapid review needed S:456 S:478 S:554

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@Fearuncle
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Fearuncle commented Sep 17, 2023 •
edited by FedeGueli
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image
tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_43e49_67b9f0.json?c=gt-S_554&label=id:node_7025026
First Seq: 2023-07-05
Most Recent: 2023-09-04
Gisaid Query: G23224T, A4364G, G21761T or (A4364G,G23224T)

EPI_ISL_18221141 EPI_ISL_18010404 England/CLIMB-CM7YF69G/2023 EPI_ISL_18221155 EPI_ISL_18098555 EPI_ISL_18214173 EPI_ISL_18214204 EPI_ISL_18221744 EPI_ISL_18221750 EPI_ISL_18248333 EPI_ISL_18215059 EPI_ISL_18258620 EPI_ISL_18258619 EPI_ISL_18258623 EPI_ISL_18258622 EPI_ISL_18258625 EPI_ISL_18258624 EPI_ISL_18258626 EPI_ISL_18258628 EPI_ISL_18258630 EPI_ISL_18258629 EPI_ISL_18258631 EPI_ISL_18258621 EPI_ISL_18258627 EPI_ISL_18258617 EPI_ISL_18258618
@FedeGueli
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The Us airport sample is from a traveller coming from Italy

@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (26) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (28) represents 2.1% of cases in Sweden Sep 19, 2023
@FedeGueli
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it seems fast.

@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (28) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (33) represents 2.1% of cases in Sweden Sep 24, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (33) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (34) represents 2.1% of cases in Sweden Sep 25, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (34) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (35) represents 2.1% of cases in Sweden Sep 27, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (35) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (37) represents 2.1% of cases in Sweden Sep 29, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (37) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (41) represents 2.1% of cases in Sweden Oct 4, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (41) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (44) represents 2.1% of cases in Sweden Oct 5, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (44) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (49) represents 2.1% of cases in Sweden Oct 8, 2023
@NkRMnZr NkRMnZr mentioned this issue Oct 9, 2023
Closed
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (49) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (50) represents 2.1% of cases in Sweden Oct 12, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (50) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (53) represents 2.1% of cases in Sweden Oct 13, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (53) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (56) represents 2.1% of cases in Sweden Oct 15, 2023
FedeGueli referenced this issue in cov-lineages/pango-designation Oct 17, 2023
@corneliusroemer
Designate HN.3.1 (S:E554D) with 50 seqs
ffa4130
@FedeGueli FedeGueli mentioned this issue Oct 17, 2023
Closed
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (56) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (61) represents 2.1% of cases in Sweden Oct 18, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (61) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (62) represents 2.1% of cases in Sweden Oct 19, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (62) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (63) represents 2.1% of cases in Sweden Oct 22, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (63) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (64) represents 2.1% of cases in Sweden Oct 24, 2023
@FedeGueli
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one sample only in october also prevalene in Sweden went down to 0,%

@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (64) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (65) represents 2.1% of cases in Sweden Oct 25, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (65) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (66) represents 2.1% of cases in Sweden Oct 29, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (66) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (71) represents 2.1% of cases in Sweden Oct 30, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (71) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (72) represents 2.1% of cases in Sweden Nov 1, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (72) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (74) represents 2.1% of cases in Sweden Nov 5, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (74) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (75) represents 2.1% of cases in Sweden Nov 9, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (75) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (76) represents 2.1% of cases in Sweden Nov 11, 2023
@Fearuncle Fearuncle changed the title HN.1 + ORF1a:I1367V and S:E554D (76) represents 2.1% of cases in Sweden HN.1 + ORF1a:I1367V and S:E554D (77) represents 2.1% of cases in Sweden Nov 12, 2023
@Fearuncle Fearuncle closed this as not planned Won't fix, can't repro, duplicate, stale Nov 14, 2023
@FedeGueli
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Thank you

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