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HK.3+S:P809S(81 seqs, 17 countries) #764

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xz-keg opened this issue Sep 8, 2023 · 9 comments
Closed

HK.3+S:P809S(81 seqs, 17 countries) #764

xz-keg opened this issue Sep 8, 2023 · 9 comments
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designated FLip = S:L455F / S:F456L
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HK.3.4

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@xz-keg
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xz-keg commented Sep 8, 2023 •
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HK.3+C23987T(S:P809S)

GISAID query: C23987T,G22927T,G13627A
No. of seqs: 15( USA 1(from Norway), Italy 2, China 1, Israel 1, UK 2, Singapore 1(from Denmark) Denmark 7)

15 on GISAID, 1 GBW-H10/20 duplicated pair, 1 CLIMB seq not on GISAID, so total is 15.

FIrst: EPI_ISL_18158966, Denmark, 2023-7-31
Latest: EPI_ISL_18233605, Italy, 2023-8-27

usher

image
@xz-keg xz-keg changed the title HK.3+Orf1a:T340I,S:P809S(15 seqs, 7 countries) HK.3+Orf1a:T340I,S:P809S(15 seqs, 8 countries) Sep 8, 2023
@FedeGueli FedeGueli added FLip = S:L455F / S:F456L Rapid review needed labels Sep 8, 2023
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xz-keg commented Sep 11, 2023

17, Netherlands, Canada

@xz-keg xz-keg changed the title HK.3+Orf1a:T340I,S:P809S(15 seqs, 8 countries) HK.3+Orf1a:T340I,S:P809S(17 seqs, 10 countries) Sep 11, 2023
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xz-keg commented Sep 13, 2023

22, France, Sweden

@xz-keg xz-keg changed the title HK.3+Orf1a:T340I,S:P809S(17 seqs, 10 countries) HK.3+Orf1a:T340I,S:P809S(22 seqs, 12 countries) Sep 13, 2023
@xz-keg xz-keg changed the title HK.3+Orf1a:T340I,S:P809S(22 seqs, 12 countries) HK.3+Orf1a:T340I,S:P809S(23 seqs, 12 countries) Sep 15, 2023
@xz-keg xz-keg changed the title HK.3+Orf1a:T340I,S:P809S(23 seqs, 12 countries) HK.3+Orf1a:T340I,S:P809S(25 seqs, 12 countries) Sep 18, 2023
@xz-keg xz-keg changed the title HK.3+Orf1a:T340I,S:P809S(25 seqs, 12 countries) HK.3+Orf1a:T340I,S:P809S(26 seqs, 12 countries) Sep 19, 2023
@xz-keg xz-keg changed the title HK.3+Orf1a:T340I,S:P809S(26 seqs, 12 countries) HK.3+Orf1a:T340I,S:P809S(32 seqs, 12 countries) Sep 21, 2023
@xz-keg xz-keg changed the title HK.3+Orf1a:T340I,S:P809S(32 seqs, 12 countries) HK.3+Orf1a:T340I,S:P809S(38 seqs, 12 countries) Sep 22, 2023
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xz-keg commented Sep 23, 2023

The tree changes so change the proposal to S:P809S only.

@xz-keg xz-keg changed the title HK.3+Orf1a:T340I,S:P809S(38 seqs, 12 countries) HK.3+S:P809S(38 seqs, 12 countries) Sep 23, 2023
@xz-keg xz-keg changed the title HK.3+S:P809S(38 seqs, 12 countries) HK.3+S:P809S(40 seqs, 12 countries) Sep 23, 2023
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xz-keg commented Sep 23, 2023

image

Now it looks like this.

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xz-keg commented Sep 26, 2023

46, Germany,

@xz-keg xz-keg changed the title HK.3+S:P809S(40 seqs, 12 countries) HK.3+S:P809S(47 seqs, 13 countries) Sep 26, 2023
@FedeGueli FedeGueli changed the title HK.3+S:P809S(47 seqs, 13 countries) HK.3+S:P809S(55 seqs, 13 countries) Sep 29, 2023
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xz-keg commented Sep 30, 2023

59, Switzerland, Greece,Poland,

@xz-keg xz-keg changed the title HK.3+S:P809S(55 seqs, 13 countries) HK.3+S:P809S(59 seqs, 16 countries) Sep 30, 2023
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xz-keg commented Oct 4, 2023

81, Finland

@xz-keg xz-keg changed the title HK.3+S:P809S(59 seqs, 16 countries) HK.3+S:P809S(81 seqs, 17 countries) Oct 4, 2023
@FedeGueli FedeGueli added To be proposed Green light for proposal and removed Rapid review needed labels Oct 4, 2023
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Please propose ir

@xz-keg xz-keg mentioned this issue Oct 5, 2023
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@xz-keg xz-keg closed this as completed Oct 5, 2023
@FedeGueli FedeGueli added designated and removed To be proposed Green light for proposal labels Oct 15, 2023
@FedeGueli FedeGueli added this to the HK.3.4 milestone Oct 15, 2023
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Designated HK.3.4 via cov-lineages/pango-designation@3b5d3d1

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