Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

EG.5.1 sublineage with S:D420N (3 seqs in Japan and HI, US) #658

Closed
HynnSpylor opened this issue Aug 21, 2023 · 1 comment
Closed

EG.5.1 sublineage with S:D420N (3 seqs in Japan and HI, US) #658

HynnSpylor opened this issue Aug 21, 2023 · 1 comment

Comments

@HynnSpylor
Copy link

HynnSpylor commented Aug 21, 2023

Defining mutations:
EG.5.1>A22531G>A14469C>G22820A (S:D420N), T28217C, A29700G
GISAID query: A14469C, G22820A, A22531G
Earliest seq: 2023-07-16 (HI, US- EPI_ISL_18077335)
Most recent seq: 2023-07-31 (Japan- EPI_ISL_18116076)
Countries detected: Japan (2), US (1)

Usher Tree:
屏幕截图 2023-08-21 152235
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2ee58_30f1a0.json?c=gt-S_420

S:D420N has shown certain success in GL.1 (XAY.1.1.1.1). It may be a potential mutation by Cao et al. (2023) (despite the research is based on XBB.1.5 RBD)
242475671-37a803cb-8e10-4247-be15-cc84a3049fdd

Genomes:
EPI_ISL_18077335, EPI_ISL_18106324, EPI_ISL_18116076

@FedeGueli
Copy link

closing it

@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Sep 8, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants