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GJ.1.2.1 (S:N450D) got S:T478R (9 seqs) S.Korea, Singapore, Texas, Michigan, California #597

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FedeGueli opened this issue Aug 12, 2023 · 1 comment
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GJ.1.2.1 (S:N450D) got S:T478R (9 seqs) S.Korea, Singapore, Texas, Michigan, California #597

FedeGueli opened this issue Aug 12, 2023 · 1 comment
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combo It has a couple of mutation in RBD designated S:450 S:478
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JE.1

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@FedeGueli
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It seems that 5 of the 13 seqs of GJ.1.2.1 (S:N450D) have also S:T478R

Tree
Schermata 2023-08-12 alle 20 31 41
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_e933_7cf440.json?label=id:node_7215719

Defining GJ.1.2.1 >> C14805T,S:T478R (C22995G), C25521T, C26885T

Gisaid query: C14805T, C25521T, C26885T, A22910G

Samples:
First:
hCoV-19/South Korea/KDCA247980/2023 | Original | EPI_ISL_17970035 | 2023-06-16
Last:
hCoV-19/USA/CA-GBW-H20-322-8617/2023 | Original | EPI_ISL_18067195 | 2023-07-27
Other IDs:EPI_ISL_18056566, EPI_ISL_18059613, EPI_ISL_18067177
@FedeGueli FedeGueli changed the title GJ.1.2.1 (S:N450D) got S:T478R (5seqs) S.Korea, Singapore, Texas GJ.1.2.1 (S:N450D) got S:T478R (7 seqs) S.Korea, Singapore, Texas, Michigan, California Aug 20, 2023
@FedeGueli FedeGueli added the combo It has a couple of mutation in RBD label Aug 20, 2023
@FedeGueli FedeGueli changed the title GJ.1.2.1 (S:N450D) got S:T478R (7 seqs) S.Korea, Singapore, Texas, Michigan, California GJ.1.2.1 (S:N450D) got S:T478R (9 seqs) S.Korea, Singapore, Texas, Michigan, California Aug 23, 2023
@FedeGueli
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Designated JE.1 via cov-lineages/pango-designation@e58c620

@FedeGueli FedeGueli added this to the JE.1 milestone Aug 23, 2023
FedeGueli referenced this issue in cov-lineages/pango-designation Aug 23, 2023
@corneliusroemer
Designate JE.1 (GJ.1.2.1.1, S:478R, Singapore/SouthKorea/US) with 7 seqs
e58c620
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combo It has a couple of mutation in RBD designated S:450 S:478
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@FedeGueli