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XBB.1.5.97 with S:A1070S (83 seqs, 5 countries) #484

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NkRMnZr opened this issue Jul 26, 2023 · 2 comments
Closed

XBB.1.5.97 with S:A1070S (83 seqs, 5 countries) #484

NkRMnZr opened this issue Jul 26, 2023 · 2 comments
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New mutations Lineage with an unusual/new/interesting mutation

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@NkRMnZr
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NkRMnZr commented Jul 26, 2023 •
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Defining Mutations: XBB.1.5.97 > G24770T(S:A1070S)
Query: A24383T, G24770T
Earliest seq: 2023-03-01 (EPI_ISL_17824602, Melbourne, Australia)
Latest seq: 2023-07-05 (EPI_ISL_17999376, Adelaide, Australia)
Sampled Countries: Australia (36, NSW/18, SA/7, Victoria/7, Queensland/2, Tasmania/1, WA/1), New Zealand (29), Canada (12, BC/11, Québec/1), USA (4, California/2, NY/2), Netherlands (1)

Genomes: EPI_ISL_17252286, EPI_ISL_17252293-17252294, EPI_ISL_17277498, EPI_ISL_17308293, EPI_ISL_17319339, EPI_ISL_17324223, EPI_ISL_17351214, EPI_ISL_17358985, EPI_ISL_17396622, EPI_ISL_17398329, EPI_ISL_17409002, EPI_ISL_17409311, EPI_ISL_17422814, EPI_ISL_17423001, EPI_ISL_17423003, EPI_ISL_17423095, EPI_ISL_17561070, EPI_ISL_17561616, EPI_ISL_17562096, EPI_ISL_17562140, EPI_ISL_17562150, EPI_ISL_17562358, EPI_ISL_17612781, EPI_ISL_17612788, EPI_ISL_17624255, EPI_ISL_17644751, EPI_ISL_17644803, EPI_ISL_17644861, EPI_ISL_17644895, EPI_ISL_17644956, EPI_ISL_17644973, EPI_ISL_17656582, EPI_ISL_17656687, EPI_ISL_17656777, EPI_ISL_17659450, EPI_ISL_17659502, EPI_ISL_17659684, EPI_ISL_17663075, EPI_ISL_17683494-17683495, EPI_ISL_17683564, EPI_ISL_17683566, EPI_ISL_17683688, EPI_ISL_17696725, EPI_ISL_17718833, EPI_ISL_17718862, EPI_ISL_17718978, EPI_ISL_17738960, EPI_ISL_17739812-17739813, EPI_ISL_17739973-17739975, EPI_ISL_17739980, EPI_ISL_17740111-17740112, EPI_ISL_17740118, EPI_ISL_17740251, EPI_ISL_17740281, EPI_ISL_17740283-17740284, EPI_ISL_17740386, EPI_ISL_17740389, EPI_ISL_17784388, EPI_ISL_17793427, EPI_ISL_17793669, EPI_ISL_17798901, EPI_ISL_17824206, EPI_ISL_17824589, EPI_ISL_17824602, EPI_ISL_17832389, EPI_ISL_17924298-17924299, EPI_ISL_17957441, EPI_ISL_17962296, EPI_ISL_17962664, EPI_ISL_17985928, EPI_ISL_17999376, EPI_ISL_18005442, EPI_ISL_18008803, EPI_ISL_18033023

UShER:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_cb89_101da0.json?f_userOrOld=uploaded%20sample

view from XBB.1.5.97 polytomy, with nuc 15720 and G24770T filter
poly

details
details

Trivia:

  • XBB.1.5.97 seems to sit on nuc 15720 C/T flip-flop branch at the moment.
  • S:A1070S is the definition of EU.1.1.2
@FedeGueli FedeGueli added the New mutations Lineage with an unusual/new/interesting mutation label Jul 26, 2023
@NkRMnZr
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NkRMnZr commented Aug 1, 2023

08-01: 1 sequence from California, USA: EPI_ISL_18050211

@NkRMnZr NkRMnZr changed the title XBB.1.5.97 with S:A1070S (82 seqs, 5 countries) XBB.1.5.97 with S:A1070S (83 seqs, 5 countries) Aug 1, 2023
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NkRMnZr commented Aug 13, 2023

08-13, 1 more from Queensland, Australia: EPI_ISL_18067974

seems slow, tracking it privately

@NkRMnZr NkRMnZr closed this as not planned Won't fix, can't repro, duplicate, stale Aug 13, 2023
@NkRMnZr NkRMnZr mentioned this issue Aug 13, 2023
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