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FL.19 with ORF1b:A1877V (nsp14_A353V) and S:F456L (24 seqs, 8 countries) #442

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NkRMnZr opened this issue Jul 20, 2023 · 5 comments
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@NkRMnZr
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NkRMnZr commented Jul 20, 2023

Defining Mutations: FL.19 > C19097T(ORF1b:A1877V) > T12145C > C12952T > T22928C(S:F456L), G24757T
Query: C19097T, T22928C, G24757T
Earliest seq: 2023-04-25 (EPI_ISL_17651732, Italy)
Latest seq: 2023-06-24 (EPI_ISL_17974978, England)
Sampled Countries: USA (8, Puerto Rico/3, New York/2, Pennsylvania/2, DC/1), Austria (2), Canada (2, Alberta), Italy (2), Spain (2), UK (2, England), Sweden (1)

Genomes: EPI_ISL_17651732, EPI_ISL_17788292, EPI_ISL_17790029, EPI_ISL_17799064, EPI_ISL_17831090, EPI_ISL_17838235, EPI_ISL_17853781, EPI_ISL_17854392, EPI_ISL_17854394, EPI_ISL_17854546, EPI_ISL_17859350, EPI_ISL_17881118, EPI_ISL_17881212, EPI_ISL_17974978, EPI_ISL_17980000, EPI_ISL_17986640, EPI_ISL_17989448, EPI_ISL_18007753, EPI_ISL_18007773, EPI_ISL_17813097

UShER:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2f70a_96a020.json?f_userOrOld=uploaded%20sample&label=id:node_6665032

view from FL.19 polytomy
poly

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@FedeGueli
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my query was T12145C ,C12952T ,T22928C, G24757T

@NkRMnZr
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NkRMnZr commented Jul 25, 2023

Tracking updates:

23-07-25: 5 seqs from 4 countries

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1d98a_f71750.json?f_userOrOld=uploaded%20sample&showBranchLabels=all
update1

1 from Spain: EPI_ISL_18010391
1 from Italy: EPI_ISL_18011730
1 from Alberta, Canada: EPI_ISL_18030084
1 from Ontario, Canada: EPI_ISL_18030470

new entry:
1 from France: EPI_ISL_18026769

@NkRMnZr NkRMnZr changed the title FL.19 with ORF1b:A1877V (nsp14_A353V) and S:F456L (19 seqs, 7 countries) FL.19 with ORF1b:A1877V (nsp14_A353V) and S:F456L (24 seqs, 8 countries) Jul 25, 2023
@FedeGueli FedeGueli added To be proposed Green light for proposal Rapid review needed labels Jul 25, 2023
@FedeGueli
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Please propose it.

@NkRMnZr
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NkRMnZr commented Jul 25, 2023

Transferred to cov-lineages/pango-designation#2138

@FedeGueli
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FedeGueli commented Jul 27, 2023

FL.19.1

@xz-keg xz-keg added this to the FL.19.1 milestone Dec 17, 2023
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