XBB.1.5 with ORF1a:P971S (nsp3_P153S), ORF7a:Q94H and S:F456L (26 seqs, mainly in the USA, 5 countries)

[NkRMnZr]

Defining Mutations: [On top of XBB.1.5's T17124C > T23018C] > C3176T(ORF1a:P971S) > G17079A, T22930G(S:F456L), A27675C(ORF7a:Q94H), C29323T
Query: G17079A, T22930G, A27675C
Earliest seq: 2023-03-01 (EPI_ISL_17211530, Illinois, USA)
Latest seq: 2023-06-07 (EPI_ISL_17832663, England, UK)
Sampled Countries: USA (19, Virginia/4, California/3, Illinois/3, Arizona/2, New York/2, Florida/1, Iowa/1, Michigan/1, North Carolina/1, New Jersey/1), France (3), UK (2, all England), Israel (1)

Genomes:

EPI_ISL_17211530, EPI_ISL_17259243, EPI_ISL_17321326, EPI_ISL_17333376, EPI_ISL_17373355, EPI_ISL_17430054, EPI_ISL_17524669, EPI_ISL_17585436, EPI_ISL_17585469, EPI_ISL_17588599, EPI_ISL_17618893, EPI_ISL_17639662, EPI_ISL_17657627, EPI_ISL_17673604, EPI_ISL_17694227, EPI_ISL_17694228, EPI_ISL_17768067, EPI_ISL_17789201, EPI_ISL_17803716, EPI_ISL_17803985, EPI_ISL_17832663, EPI_ISL_17853897, EPI_ISL_17854730, EPI_ISL_17855048, EPI_ISL_17855890

UShER:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_38869_d69ad0.json?f_userOrOld=uploaded%20sample

view from XBB.1.5 polytomy:

details:

Trivia:

• This lineage started early March in the USA, seemlingly dying off but now is on a second drive.

[NkRMnZr]

Tracking updates

Update 1: 23-07-03, 1 seq from Curaçao

EPI_ISL_17884954

[FedeGueli]

it seems very slow (surprisingly) closing it for now.