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LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (27 sequences, 8 countries) #2027

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Over-There-Is opened this issue Sep 13, 2024 · 8 comments
Closed

LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (27 sequences, 8 countries) #2027

Over-There-Is opened this issue Sep 13, 2024 · 8 comments
Labels
Convergent evolution Lineages with convergent mutations DeFLiRT S:S31/F32-+S:R346T+S:F456L designated NSP14 S:183 S:445 S:1176
Milestone
NL.6

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@Over-There-Is
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Over-There-Is commented Sep 13, 2024 •
edited
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LB.1.3.1> C18526T(Orf1b:R1687C)> G25088T(S:V1176F)
Query: C18131T, C27476T, G25088T

Earliest sequence: 07-18 England, United Kingdom EPI_ISL_19305729
Latest sequence: 08-29 Galway, Ireland EPI_ISL_19410692
Regions detected: Ireland 3, Sweden 2, UK 2, Canada 1, Luxembourg 1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_56e6a_437550.json?c=country&label=id:node_7026835
image

Sequences:
EPI_ISL_19305729, EPI_ISL_19340041, EPI_ISL_19372147,
EPI_ISL_19375274, EPI_ISL_19375362, EPI_ISL_19410565,
EPI_ISL_19410684, EPI_ISL_19410686, EPI_ISL_19410692
@Over-There-Is Over-There-Is changed the title LB.1.3.1 subbranch with S:V1176F (9 sequences, 5 countries) LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (9 sequences, 5 countries) Sep 13, 2024
@FedeGueli
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S:V1176F was in all Gamma and recently got designated in KP.2.12 but it was slow.

@FedeGueli FedeGueli added Convergent evolution Lineages with convergent mutations S:1176 PLPro NSP14 S:445 S:183 DeFLiRT S:S31/F32-+S:R346T+S:F456L and removed PLPro labels Sep 13, 2024
@FedeGueli FedeGueli changed the title LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (9 sequences, 5 countries) LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (10 sequences, 6 countries) Sep 17, 2024
@FedeGueli
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+1 italy

@Over-There-Is Over-There-Is changed the title LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (10 sequences, 6 countries) LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (11 sequences, 6 countries) Sep 24, 2024
@FedeGueli FedeGueli changed the title LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (11 sequences, 6 countries) LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (12 sequences, 6 countries) Sep 30, 2024
@FedeGueli
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+1 Wales

@FedeGueli FedeGueli changed the title LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (12 sequences, 6 countries) LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (14 sequences, 7 countries) Oct 7, 2024
@FedeGueli
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14, US

@Over-There-Is Over-There-Is changed the title LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (14 sequences, 7 countries) LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (16 sequences, 7 countries) Oct 14, 2024
@Over-There-Is Over-There-Is changed the title LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (16 sequences, 7 countries) LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (20 sequences, 7 countries) Oct 23, 2024
@Over-There-Is Over-There-Is changed the title LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (20 sequences, 7 countries) LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (25 sequences, 7 countries) Oct 26, 2024
@Over-There-Is
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Denmark

@Over-There-Is Over-There-Is changed the title LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (25 sequences, 7 countries) LB.1.3.1 subbranch with S:V1176F and Orf1b:R1687C (27 sequences, 8 countries) Oct 30, 2024
@Over-There-Is
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Germany

@FedeGueli
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4 collected in October from 3 different places

@xz-keg
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xz-keg commented Nov 8, 2024 •
edited by FedeGueli
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designated NL.6 via cov-lineages/pango-designation@d4c311e#diff-ead4244ff49c81bc758e9f068f5ef42156bd985b9c86de8fa4d6fcd7f2829090R1141

@xz-keg xz-keg closed this as completed Nov 8, 2024
@xz-keg xz-keg added this to the NL.6 milestone Nov 8, 2024
FedeGueli referenced this issue in cov-lineages/pango-designation Nov 9, 2024
@corneliusroemer
Designate NL.2-7 and LF.7.1.3
d4c311e
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Convergent evolution Lineages with convergent mutations DeFLiRT S:S31/F32-+S:R346T+S:F456L designated NSP14 S:183 S:445 S:1176
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@xz-keg @Over-There-Is @FedeGueli